Gene
RNA
| Item | Value |
|---|---|
| gene id | G226649 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000053 |
| NCBI id | null |
| chromosome length | 7014373 |
| location | 2083378 ~ 2083915 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| PREDICTED: uncharacterized protein LOC104955046 |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU257177 | True | 217 | lncRNA | 0.43 | 3 | 2083378 | 2083915 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000053_02041737_02066520 | NA | coding | downstream | 16720 | 2041690 ~ 2066658 (-) |
| CI01000053_02032534_02040859 | DHX40 | coding | downstream | 41941 | 2032380 ~ 2041437 (-) |
| CI01000053_02029813_02031204 | CLTCB, CLTC | coding | downstream | 51588 | 2029813 ~ 2031790 (-) |
| CI01000053_02003828_02014352 | CLTC | coding | downstream | 69026 | 2002910 ~ 2014352 (-) |
| CI01000053_01982526_02001150 | VMP1 | coding | downstream | 82228 | 1982302 ~ 2001150 (-) |
| CI01000053_02109802_02117454 | NA | coding | upstream | 25256 | 2109171 ~ 2117957 (-) |
| CI01000053_02122241_02132642 | CLPTM1 | coding | upstream | 37714 | 2121629 ~ 2132787 (-) |
| CI01000053_02145248_02149126 | NA | coding | upstream | 61263 | 2145178 ~ 2149381 (-) |
| CI01000053_02225226_02226481 | YPELD, YPEL2B, YPEL1, YPELC, YPEL2 | coding | upstream | 141295 | 2225210 ~ 2226481 (-) |
| CI01000053_02241056_02246083 | GDPD1 | coding | upstream | 156648 | 2240563 ~ 2246301 (-) |
| G226647 | NA | non-coding | downstream | 14638 | 2068531 ~ 2068740 (-) |
| G226645 | NA | non-coding | downstream | 19653 | 2063410 ~ 2063725 (-) |
| G226542 | NA | non-coding | downstream | 151498 | 1931548 ~ 1931880 (-) |
| G226553 | NA | non-coding | downstream | 152041 | 1929839 ~ 1931337 (-) |
| G226543 | NA | non-coding | upstream | 19478 | 2103393 ~ 2104463 (-) |
| G226657 | NA | non-coding | upstream | 22307 | 2106222 ~ 2106444 (-) |
| G226658 | NA | non-coding | upstream | 22815 | 2106730 ~ 2107029 (-) |
| G226660 | NA | non-coding | upstream | 54653 | 2138568 ~ 2138991 (-) |
| G226530 | NA | non-coding | upstream | 55627 | 2139542 ~ 2142470 (-) |
| G225812 | NA | other | downstream | 616646 | 1459595 ~ 1466732 (-) |
| G225574 | NA | other | downstream | 1536510 | 543647 ~ 546868 (-) |
| G226826 | NA | other | upstream | 481977 | 2565892 ~ 2567072 (-) |
| G226963 | NA | other | upstream | 912802 | 2996717 ~ 2997268 (-) |
| CI01000053_03551506_03551965 | NA | other | upstream | 1466418 | 3550333 ~ 3552847 (-) |
| G227604 | NA | other | upstream | 2003322 | 4087237 ~ 4087740 (-) |
