G226530


Basic Information

Item Value
gene id G226530
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 2139542 ~ 2142470 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU257042
TTTAACTTTGACCTTCACTGTGCTGAGCGCCAAACCCTGCGAGTCTAGAACTTTGTATGTTCCGGCACTGCTGGCCGTAACCCTCTTAAAAAACAACTTGTTGTTGCTCTCTTTTGGATAGCCTTTCTTGCCAATGTCTGCACCTCTTTCCCACAAGACTGTCCAGCTGGAGTCATTTCTGTTTTGAAAAATCACTTGCTCAGCTTGATGCGTGTACAGATCCAGGATCAGGTCTGCTCCAGTCTCCACAGATTTGATAGTCTTGTGATCTACAACAACTGCAAGCTGGACGCTCTGAATGAAAATTCGGTTCTTGAAACTTGATTCACCAACCACCAGGTAACACTCGTAAATGCCTGCATCACTGAATCTGACATCCCACAAGAACAGAGAGCAGTTCCCCCTCATAAGCATTTCCTCAGGCACATCCGCCCGGTCTCTGTAAGCCTCTCCTTGAAACAGTTCCTCTCCCATTCGCTCAAACACTGAACTGGTTATGGTCTGCCACTGAATGTGAGGCGTGTGAGCAGAGTCCAGCTGTGATGCCACAGTACACGGCAGCACAGCTGGCAGACCAACCTTCGATGAGGTGTAGACAACGCTCGAGAGGGGAGAGGAGCCTATAGGGATAAATTATTATTTAACTATGTAAAAAGCAAAAATGCTTATAAATAGCCTAATAAAGTTAGCCTACTATTGTCATTGTCTACTTACCAACACAAATGAGAAGCCATTGCATTAGAAAGGCCAAAACCCTGTGAAGAAATGTTATATAGATTAAATTATAATTACAGAGACTGAAATTCTCTTTACAAATGATCCAACTTTCTCAGAACTTTGGCTAACAAGGTTCTGTCAAACAGTATTCCAGTAACGTTAATAGAACGTTCGTTCATATGGTCGTTAAAATTCTCAAAACATTAGCACAAAAACATTATTTATACATTGTTCATGGAACTTTTTTTTTTTCTGAAATGTTTTAGTTGGTTGTTCGTCATTTTGTAAATGTTACTGCTTCAGACTGTTTATACTAGAACATTCTAATGTAACGTAGCCGTAATGTTTGCAAAATGATAAAATAAAATGTTCCCTTAAACTTTGTATAACCAAGAAAGACGCTTTGAACGTTCAGAGATCATTCAGAATAATGTTTTCATTACTCAATGGGAACTTTATCAAAACGTTTTTAGAACATATTTTAGCTAGCTGGGATGGTCGTCCAAACCAATTAGTCAATTAGTGTATCCAGATGTCTTTCTTTTGTTTATATTCTGCCGGAAAAATAATTTGAAATAGTCTTTTTTTTCCTTCTTCTTCTTCCCCAGGCGTTTTCAAGTTTAAAATTTTCCAACGCGTCTAAAGACGAATGCATTCTTGTGTTCTATTACATTGTGCTCCATCTGTGTTTGAACGCGTCTTCTTGCTCTCTCAGTTTCAGATTCCTGATTAAACGAGTCTAAGTGAAACGAAACTTAAACTCAGTATAGCCGGTAGTTTCCTGCAATACCGGAGGCTGCAGTTTCAGGACTGCAGTTCTGGGACCACAGAGGTTATTTTTATGTAGCTATTAGCAGTTTATACTATTTTATAACACTTATTCAATTTTGCATTTGGATTAGGCTATGCTAGCCTACTCAATCAAGCGACAAACTTTAAAAAACAACAACAAGCTCCGAATGTTGATTCGAATTATTACATTTTAAAATGTGACCATTTTCTCAGAATATCACCTAGTCTTCTATTGTGTTGGTATTAAAGAGGTTTCTCACCAGTTACTTCTGTCCATGTCGCATTTGTGTCGCTCCTGTTTCTGCCAGATATGCTCTGACTGTAAACAGCTCTGCAGCAGCGTTATATGTAGGCTATGCTACGAAGTCTTTCTCCATTTCTCAAAAACGAAACTTACATTAAGGGATACCGTTACTTCGGCGCCTTGACTTTAGATGGACAATTTATTGACCATTGTTTTCCCACGCAGTCGTCATAGGTGCAAATTTACAAAATTTTCAACAAGTCCCTGGTTGTTGTTTCTACCATGTTGGATGTC
>TU257043
TTTAACTTTGACCTTCACTGTGCTGAGCGCCAAACCCTGCGAGTCTAGAACTTTGTATGTTCCGGCACTGCTGGCCGTAACCCTCTTAAAAAACAACTTGTTGTTGCTCTCTTTTGGATAGCCTTTCTTGCCAATGTCTGCACCTCTTTCCCACAAGACTGTCCAGCTGGAGTCATTTCTGTTTTGAAAAATCACTTGCTCAGCTTGATGCGTGTACAGATCCAGGATCAGGTCTGCTCCAGTCTCCACAGATTTGATAGTCTTGTGATCTACCGTGGGAAGAGACAAGCCAACAACTGCAAGCTGGACGCTCTGAATGAAAATTCGGTTCTTGAAACTTGATTCACCAACCACCAGGTAACACTCGTAAATGCCTGCATCACTGAATCTGACATCCCACAAGAACAGAGAGCAGTTCCCCCTCATAAGCATTTCCTCAGGCACATCCGCCCGGTCTCTGTAAGCCTCTCCTTGAAACAGTTCCTCTCCCATTCGCTCAAACACTGAACTGGTTATGGTCTGCCACTGAATGTGAGGCGTGTGAGCAGAGTCCAGCTGTGATGCCACAGTACACGGCAGCACAGCTGGCAGACCAACCTTCGATGAGGTGTAGACAACGCTCGAGAGGGGAGAGGAGCCTATAGGGATAAATTATTATTTAACTATGTAAAAAGCAAAAATGCTTATAAATAGCCTAATAAAGTTAGCCTACTATTGTCATTGTCTACTTACCAACACAAATGAGAAGCCATTGCATTAGAAAGGCCAAAACCCTGTGAAGAAATGTTATATAGATTAAATTATAATTACAGAGACTGAAATTCTCTTTACAAATGATCCAACTTTCTCAGAACTTTGGCTAACAAGGTTCTGTCAAACAGTATTCCAGTAACGTTAATAGAACGTTCGTTCATATGGTCGTTAAAATTCTCAAAACATTAGCACAAAAACATTATTTATACATTGTTCATGGAACTTTTTTTTTTTCTGAAATGTTTTAGTTGGTTGTTCGTCATTTTGTAAATGTTACTGCTTCAGACTGTTTATACTAGAACATTCTAATGTAACGTAGCCGTAATGTTTGCAAAATGATAAAATAAAATGTTCCCTTAAACTTTGTATAACCAAGAAAGACGCTTTGAACGTTCAGAGATCATTCAGAATAATGTTTTCATTACTCAATGGGAACTTTATCAAAACGTTTTTAGAACATATTTTAGCTAGCTGGGATGGTCGTCCAAACCAATTAGTCAATTAGTGTATCCAGATGTCTTTCTTTTGTTTATATTCTGCCGGAAAAATAATTTGAAATAGTCTTTTTTTTCCTTCTTCTTCTTCCCCAGGCGTTTTCAAGTTTAAAATTTTCCAACGCGTCTAAAGACGAATGCATTCTTGTGTTCTATTACATTGTGCTCCATCTGTGTTTGAACGCGTCTTCTTGCTCTCTCAGTTTCAGATTCCTGATTAAACGAGTCTAAGTGAAACGAAACTTAAACTCAGTATAGCCGGTAGTTTCCTGCAATACCGGAGGCTGCAGTTTCAGGACTGCAGTTCTGGGACCACAGAGGTTATTTTTATGTAGCTATTAGCAGTTTATACTATTTTATAACACTTATTCAATTTTGCATTTGGATTAGGCTATGCTAGCCTACTCAATCAAGCGACAAACTTTAAAAAACAACAACAAGCTCCGAATGTTGATTCGAATTATTACATTTTAAAATGTGACCATTTTCTCAGAATATCACCTAGTCTTCTATTGTGTTGGTATTAAAGAGGTTTCTCACCAGTTACTTCTGTCCATGTCGCATTTGTGTCGCTCCTGTTTCTGCCAGATATGCTCTGACTGTAAACAGCTCTGCAGCAGCGTTATATGTAGGCTATGCTACGAAGTCTTTCTCCATTTCTCAAAAACGAAACTTACATTAAGGGATACCGTTACTTCGGCGCCTTGACTTTAGATGGACAATTTATTGACCATTGTTTTCCCACGCAGTCGTCATAGGTGCAAATTTACAAAATTTTCAACAAGTCCCTGGTTGTTGTTTCTACCATGTTGGATGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU257042 False 2047 lncRNA 0.39 2 2139542 2142470
TU257043 True 2065 lncRNA 0.39 2 2139542 2142470

Neighbor

gene id symbol gene type direction distance location
CI01000053_02122241_02132642 CLPTM1 coding downstream 6755 2121629 ~ 2132787 (-)
CI01000053_02109802_02117454 NA coding downstream 21585 2109171 ~ 2117957 (-)
CI01000053_02041737_02066520 NA coding downstream 72884 2041690 ~ 2066658 (-)
CI01000053_02032534_02040859 DHX40 coding downstream 98105 2032380 ~ 2041437 (-)
CI01000053_02029813_02031204 CLTCB, CLTC coding downstream 107752 2029813 ~ 2031790 (-)
CI01000053_02145248_02149126 NA coding upstream 2708 2145178 ~ 2149381 (-)
CI01000053_02225226_02226481 YPELD, YPEL2B, YPEL1, YPELC, YPEL2 coding upstream 82740 2225210 ~ 2226481 (-)
CI01000053_02241056_02246083 GDPD1 coding upstream 98093 2240563 ~ 2246301 (-)
CI01000053_02390840_02400630 WBSCR17 coding upstream 248021 2390491 ~ 2401108 (-)
CI01000053_02427507_02435639 FLOT2A, FLT2, FLOT2B, FLOT2 coding upstream 285037 2427507 ~ 2435639 (-)
G226660 NA non-coding downstream 551 2138568 ~ 2138991 (-)
G226658 NA non-coding downstream 32513 2106730 ~ 2107029 (-)
G226657 NA non-coding downstream 33098 2106222 ~ 2106444 (-)
G226543 NA non-coding downstream 35079 2103393 ~ 2104463 (-)
G226649 NA non-coding downstream 55627 2083378 ~ 2083915 (-)
G226661 NA non-coding upstream 8859 2151329 ~ 2151649 (-)
G226545 NA non-coding upstream 59355 2201825 ~ 2204268 (-)
G226719 NA non-coding upstream 179325 2321795 ~ 2322051 (-)
CI01000053_02486308_02487685 NA non-coding upstream 342674 2485144 ~ 2488030 (-)
G226829 NA non-coding upstream 418440 2560910 ~ 2563363 (-)
G225812 NA other downstream 672810 1459595 ~ 1466732 (-)
G225574 NA other downstream 1592674 543647 ~ 546868 (-)
G226826 NA other upstream 423422 2565892 ~ 2567072 (-)
G226963 NA other upstream 854247 2996717 ~ 2997268 (-)
CI01000053_03551506_03551965 NA other upstream 1407863 3550333 ~ 3552847 (-)
G227604 NA other upstream 1944767 4087237 ~ 4087740 (-)

Expression


Co-expression Network