Gene
RNA
| Item | Value |
|---|---|
| gene id | G226834 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000053 |
| NCBI id | null |
| chromosome length | 7014373 |
| location | 2568685 ~ 2568928 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU257367 | True | 244 | lncRNA | 0.53 | 1 | 2568685 | 2568928 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000053_02533620_02536887 | NA | coding | downstream | 30845 | 2533593 ~ 2537840 (-) |
| CI01000053_02497603_02508436 | NA | coding | downstream | 59962 | 2497590 ~ 2508723 (-) |
| CI01000053_02486308_02487685 | NA | coding | downstream | 80655 | 2485144 ~ 2488030 (-) |
| CI01000053_02449164_02455151 | NA | coding | downstream | 113534 | 2449016 ~ 2455151 (-) |
| CI01000053_02427507_02435639 | FLOT2A, FLT2, FLOT2B, FLOT2 | coding | downstream | 133046 | 2427507 ~ 2435639 (-) |
| CI01000053_02694095_02694625 | DUSP14 | coding | upstream | 124470 | 2693398 ~ 2696172 (-) |
| CI01000053_02716472_02737494 | TADA2A | coding | upstream | 147084 | 2716012 ~ 2737577 (-) |
| CI01000053_02739707_02746533 | NA | coding | upstream | 170566 | 2739494 ~ 2746582 (-) |
| CI01000053_02753283_02763401 | NA | coding | upstream | 184150 | 2753078 ~ 2763797 (-) |
| CI01000053_02817187_02856529 | TRAF4A, TRAF4 | coding | upstream | 246938 | 2815866 ~ 2856648 (-) |
| G226833 | NA | non-coding | downstream | 956 | 2567473 ~ 2567729 (-) |
| G226829 | NA | non-coding | downstream | 5322 | 2560910 ~ 2563363 (-) |
| G226719 | NA | non-coding | downstream | 246634 | 2321795 ~ 2322051 (-) |
| G226545 | NA | non-coding | downstream | 364417 | 2201825 ~ 2204268 (-) |
| G226862 | NA | non-coding | upstream | 24392 | 2593320 ~ 2595466 (-) |
| G226847 | NA | non-coding | upstream | 143259 | 2712187 ~ 2715746 (-) |
| G226848 | NA | non-coding | upstream | 179650 | 2748578 ~ 2751192 (-) |
| G226906 | NA | non-coding | upstream | 196185 | 2765113 ~ 2765353 (-) |
| G226826 | NA | other | downstream | 1613 | 2565892 ~ 2567072 (-) |
| CI01000053_02225226_02226481 | YPELD, YPEL2B, YPEL1, YPELC, YPEL2 | other | downstream | 331289 | 2225210 ~ 2226481 (-) |
| G225812 | NA | other | downstream | 1101953 | 1459595 ~ 1466732 (-) |
| G225574 | NA | other | downstream | 2021817 | 543647 ~ 546868 (-) |
| G226963 | NA | other | upstream | 427789 | 2996717 ~ 2997268 (-) |
| CI01000053_03551506_03551965 | NA | other | upstream | 981405 | 3550333 ~ 3552847 (-) |
| G227604 | NA | other | upstream | 1518309 | 4087237 ~ 4087740 (-) |
| G228651 | NA | other | upstream | 3215555 | 5784483 ~ 5787690 (-) |
| G228750 | NA | other | upstream | 3362664 | 5931592 ~ 5932241 (-) |
