G226847


Basic Information

Item Value
gene id G226847
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 2712187 ~ 2715746 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU257388
ATAATAATAATTACAAAACTAGTAAAAGTAAAATGACTCTACACATTACGTCAATGGGGGAAAATTGTCTTGAAAATAATTTTACACTCCAAAAATATCTTTAGCCAAATTCCTTCAGTTTCTTTATGCAAAATTACTTTTGAAGTGAAATATGATCCAGGCAGGTTTTGTGAGACTTGTATGCAGAGTATGTTGTAATATTACAACTTAATTCATTACACTTCAGTTATTATTTATGCATAATTCATTTTTGTACAACAGTTGTGTTAGTTGTGCCACTATAATATTTGAACATAAATATGTTCTTTAAAACTTGTGGCTAGTTTTAATGTGGCGGCTGAGAAAGAGTCTTCTGAAATCTCGGGTGGCAAAATTTACACCAGTTGAGTGTGAAATCTATTACTGTCGCCTCGCTCTAGTGAAGCGGCATGACGCGTGAAAACCGTGACTAACGCTAGCAGCCTTAGCACACGCATGGCAGCAGCAGCAACCATCAGCCTTTAGAAAGCATATCACAACAGCGTAGAGCGACGTCGGCGCGTGTTAGGGACCTGATTAACACTCCAGATCCCACCTTTGATGATAAGCCCCTGCCCAAATGAGAATAAGCCCCATGGAGAAATGAAGGCCTGTTTGATGGCTGAAAGGCGTGGAGTTTGGAATTGACATTTTTATTTGTGTCCTCATTCCTCTAGGTGACATCGGAGGTCTCACATTATGTAGTTTCTGAATCTGAACTGCTTTCAGCATGGCTCAGAGTGAAAGTATGACGGTGGAATTTTGTGTCCAGATTCACAATTTTCCATCTAAATTTCATTGGACTTCAATCTCGTTTGGCATTCTAGGCAGAAATAGTCCTCGTACAGGAGCGTAGCATCAGACTGGGATGGCATGCTATAATGTCTCCGATCTGTAAAGCGTTTGGTGTGTGAGTGAACGGCTGCTGACTTGCAGCAGAGCGGAAAGACAGATTCTGGTGTCGGCTCACTGTGTGGGAGGTAGATCTGCTGTTTTGCGTGCTCATTCCTTCATCAAACCACAGAGCCCGTCTTTAAATGAGATCTGATGCCTCTTCATGCACTCAATTTTCACCCACAGTTCATAGTCATCTGCATTTTAGTTCATTTCCATAATTCACCTATTGAATGGGGACTGAAGCTTTCAAACTTCAAAAAAAACTTTACAAAATCACCATAAAAGTTTTATAAAAGTAGTCCATATATATTTTAAAGAGTTTATTCACCCAATGAAAATTCTGTCATTTATTCACCTTCATGTCTTTCCCAACACAGGACTTTCATCTTTGGAATGCAAATGAAGATATTTTTTAATGAAATCTGAGAAATTTCTATCTCTCCATTGAAAAGACTATTCACCCAAAACTGATGTCGTAAAAAACCCAAGACATTGTAAAATAAATCCATATGAATCGAGGGGTTTAATCCAAGTCTTATGAAGAGACACGGTCGCTTTATATGATGAATAGATATAACTTAGGCTTTTAATCACATATACAGTAAACATCGATCAGTGAACATATAGAGCAGCACCCGTATTAGAGTACTCCATTGAAATACACTTTCAATGGAGGGACAGAAATCTCTCAGATTTCATTAAAAAGATCTTCATTTGTGTTTTAAAGATGAACGAAAGTCTTATGGGTTTGGAACGACATGAGGGTGAGTAATTGATGACAGAATTTTAATTTTTGGGTGAACTAATCTTTTAAGTCTAAATTCTGACTTGATAAATTTTAAGTCTTACGATAGCTTTGTGTGACAAAAGATTTGATTTGTCAGCAAATCATTTATTCATCTGTATCAAATGATTCATTTCTGACTCAGAAGAACAGTTTATTCATTAACTTAATGAATGCTTTGCAGGACGGAGGCATGATTTATTTACTAAGGTTTGTGGTGATGCATGTTTCTGGCAATGGATTTATCATCTTTTCCACAGCCCTCATTCATTGTTTTATAATGTTCTTTCACCACTTCCTAATCGTCTCATTTTTATGGAAATTACATCAGTCCTATGAGATGAATGCTCTTAGTACTCTTTACCTCCCTCTTTCTCATCTACTCTATTGATTTGAGTAGGGATGCACGATATATCAGCCAACATATTGGTATCGGCCAATATATGTTCATTTTTTAATGTTATCGTTGTTGGCCCGATAAGAAAATTTGGCCGATATATTAAAGCCGATAAATAATGGATTATTTCCTTCAGCAGATCCTTCAGATGTGCGCTGTTCACCATGATCGTTTTGAATTGCTTGAAATATGATTGGAGTCACTTCAAAAAGGAAAATACAGTTAAGTGCAACGTGTGCAGCGCAAGTCTGTCATACAGGGCTACATAAAATTATAATGAGAACATAATTTTGTGCTTGGGACAGGGCTTTTAATGGTGAAACTTTTGTTTTTGTAATTAGGCTCTCAAAATTTATATAAAAATTTGGATTTAGATTTATCGCCCAATATATCGGTTATCGGCTTTCAAATATAAAGCATTATAGGTATCGGCCAAATTTTTAATATCGGTGCATCCCTAGATTTGAGGCTGTAAGTAAAGCACTAGAGCTGAACCTCTAGATCACAGAACCAGCAGCCTCCTACCTGAATACTTTTAAGTCATTTCCCTCCAGCTTCTGCTGGTCAGTGAATGAGCGGCGACTGGTAATTTCGCCACAACAAGGTACAAAATCACTTTCCAGACCCTTTTCTCTCTCTGTTCCGCTGTTGTGGAATGAGCATCCAACCTCCAGTATCATTAAAAATTCAACCTCCTTGTTCAATCAAAACTGTACAGGCACCCTAAAGTGATTCAGCTGACTGAAAGTATATGGGTAGTCTATTCAGTGCCTGATTAGAAATCACAAAATCTCTTTATAATGTTTGTCACCTGTACTATGTTATGACCGTAAATGTCTTAAATTGTAACGTGTAAAAATTTGTTTTGTTTTTTTAAAAAAAAGGGGGTAAGTGTTCATGCTGCCTTAAAATTTTAAGTTTAGTCAACTTGAAATGTGAAGTTAAATAAAGTGACAACTTGGATATTTTTGTAGAGTGTCTCAAGTTAAATCGAGAAGTTTTTCTAACTAATTTCAAGTTCAATCATATTTTACAGTGGATTGTAAACTGACACATTTTTCCATCTTTGTTTTTTTTCTACTTATTACATTTTGTCAACTGTGCAGCATACTAACTTAGCAGAAGCGTAGCATAGCCAACTCTACACAAGTAACTAACTCTTCATGTAATTCAGCACTCCTTATGGCTGTTGATCAGGAATTATAAATTGTCTGATTAACGCCTAAATGTGAATGACTAAGTGCCATAATGTGTATCAGATTAGGCCGAAAGACCAGTTTAAGCTTTTTTTTTGTCCCCCAGAGGCAATTTGATGAATGATTATGCAGATGATAAGTATTTTTTTTGTCTTTGGAATAACATGTAAAGGAAATACTGTAGGTTTGATTTAATCTATTGGAATTGACAGGATTTTAATAAAGTGGTCTCTAGTAATGAAAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU257388 True 3537 lncRNA 0.36 2 2712187 2715746

Neighbor

gene id symbol gene type direction distance location
CI01000053_02694095_02694625 DUSP14 coding downstream 16015 2693398 ~ 2696172 (-)
CI01000053_02533620_02536887 NA coding downstream 174347 2533593 ~ 2537840 (-)
CI01000053_02497603_02508436 NA coding downstream 203464 2497590 ~ 2508723 (-)
CI01000053_02486308_02487685 NA coding downstream 224157 2485144 ~ 2488030 (-)
CI01000053_02449164_02455151 NA coding downstream 257036 2449016 ~ 2455151 (-)
CI01000053_02716472_02737494 TADA2A coding upstream 266 2716012 ~ 2737577 (-)
CI01000053_02739707_02746533 NA coding upstream 23748 2739494 ~ 2746582 (-)
CI01000053_02753283_02763401 NA coding upstream 37332 2753078 ~ 2763797 (-)
CI01000053_02817187_02856529 TRAF4A, TRAF4 coding upstream 100120 2815866 ~ 2856648 (-)
CI01000053_02862161_02873752 NEK8 coding upstream 145985 2861731 ~ 2873752 (-)
G226862 NA non-coding downstream 116721 2593320 ~ 2595466 (-)
G226834 NA non-coding downstream 143259 2568685 ~ 2568928 (-)
G226833 NA non-coding downstream 144458 2567473 ~ 2567729 (-)
G226829 NA non-coding downstream 148824 2560910 ~ 2563363 (-)
G226848 NA non-coding upstream 32832 2748578 ~ 2751192 (-)
G226906 NA non-coding upstream 49367 2765113 ~ 2765353 (-)
G226919 NA non-coding upstream 51506 2767252 ~ 2767502 (-)
G226925 NA non-coding upstream 62229 2777975 ~ 2778676 (-)
G226826 NA other downstream 145115 2565892 ~ 2567072 (-)
CI01000053_02225226_02226481 YPELD, YPEL2B, YPEL1, YPELC, YPEL2 other downstream 474791 2225210 ~ 2226481 (-)
G225812 NA other downstream 1245455 1459595 ~ 1466732 (-)
G225574 NA other downstream 2165319 543647 ~ 546868 (-)
G226963 NA other upstream 280971 2996717 ~ 2997268 (-)
CI01000053_03551506_03551965 NA other upstream 834587 3550333 ~ 3552847 (-)
G227604 NA other upstream 1371491 4087237 ~ 4087740 (-)
G228651 NA other upstream 3068737 5784483 ~ 5787690 (-)
G228750 NA other upstream 3215846 5931592 ~ 5932241 (-)

Expression


Co-expression Network