XLOC_009829 (si:ch211-254p10.2)


Basic Information

Item Value
gene id XLOC_009829
gene name si:ch211-254p10.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 19013018 ~ 19023116 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019624
CATGCAAGAAATCAATATTTCAAGACCCTTTATCATTTAGGATCAGCCCTCATCTACCTCAAGGGTCCCAAGTTCCTCATCTATGTGAGTGGAGCGTTATCTATGTGGGGTGATCGCATGTGGCATTTCGCCATCTCTGTCTTCCTGATTGAGCTCTATGGACATAACCTACTGTTAACTGCCATCTTTGGACTAGTGGTGGCCGGATCGGTGCTCTTATTAGGGGCCTTGATAGGAGACTGGGTCGATCGCAACCCAAGGaacaaaggtaaaataagtgatgcatttatgaatgtcagtttttttattcattaa
>TCONS_00019625
GGTGATCGCATGTGGCATTTCGCCATCTCTGTCTTCCTGATTGAGCTCTATGGACATAACCTACTGTTAACTGCCATCTTTGGACTAGTGGTGGCCGGATCGGTGCTCTTATTAGGGGCCTTGATAGGAGACTGGGTCGATCGCAACCCAAGGaacaaagTGGCCCATGCATCCCTGTTCATTCAGAACACCTCAGTGACTGTCTGCAGCATTGTGCTTATGTTGGTTTTCTCATACAAAAAATGGATTGAGGAAATCTGGGATGGGTGGCTGACTGTGGTTTGTTATACGGTGGTGATCATCCTGGCAGATGTGGCGAACCTCGCCAGCACAGCTCTCACCATTGCCATCCAGAGGGATTGGATAGTGGTGATCACAGGCTACAACCGTGGTCACCTCGCAGGAATGAATGCTACGATGAGGCGGATTGATCAGGTTACCAACATCCTGGCTCCCCTGGCGGTGGGTCAGGTAATGACCCTGGCCTCTAATGTGGTTGGCTGTGGCTTCATCTTAGGATGGAATGTGGTGTCCCTCATTGTAGAGTTCATCTTCCTCTCCAGAGTTTATCGTATCGTACCTGCACTGTCTGTCAAACCTCCAGCAATGGAACATCAAAGCTATCTagagaagaaaagagaaagaaGATGTTTAAAAGGCAGAACCTCATCATGTCCAGCTCCAGCCATCTCAGAGGAAACTTCCAGTGGCCTGCATTTACAAGAAATGACCAGAATCCCCATGTGCATCCAGCGCCTGCGTGGGCTCCTCAGCACCTGCCAGGAGGGATGGAGGGCTTACTACAGACAACCTGTTTTCCTAGCCGGCCTGGGCCTTGCATTTCTATACACCACGGTACTGGGTTTCGACTGCATCACAACGGGTTATGCCTACACGCAGGGCATCAGTGGTTCCCTACTCAGCATTCTGATGGGCGTATCGGCGGTGGCGGGGCTTTTGGGCACTGTCCTGTTCACAAAGCTGCGGAAAGCATTCGGCCTGGTCAACACTGGGGTCATTTCCAGCGCTCTGCACATGCTTTGCCTGTTGCTTTGTGTGTGCTCTGTATTTGCCCCCGGGAGTCCCATAGACCTCAGCGTACTCAATATAGGGAATGTGTCGGAT
>TCONS_00019626
ATGAATGCTACGATGAGGCGGATTGATCAGGTTACCAACATCCTGGCTCCCCTGGCGGTGGGTCAGGTAATGACCCTGGCCTCTAATGTGGTTGGCTGTGGCTTCATCTTAGGATGGAATGTGGTGTCCCTCATTGTAGAGTTCATCTTCCTCTCCAGAGTTTATCGTATCGTACCTGCACTGTCTGTCAAACCTCCAGCAATGGAACATCAAAGCTATCTagagaagaaaagagaaagaaGATGTTTAAAAGGCAGAACCTCATCATGTCCAGCTCCAGCCATCTCAGAGGAAACTTCCAGTGGCCTGCATTTACAAGAAATGACCAGAATCCCCATGTGCATCCAGCGCCTGCGTGGGCTCCTCAGCACCTGCCAGGAGGGATGGAGGGCTTACTACAGACAACCTGTTTTCCTAGCCGGCCTGGGCCTTGCATTTCTATACACCACGGTACTGGGTTTCGACTGCATCACAACGGGTTATGCCTACACGCAGGGCATCAGTGGTTCCCTACTCAGCATTCTGATGGGCGTATCGGCGGTGGCGGGGCTTTTGGGCACTGTCCTGTTCACAAAGCTGCGGAAAGCATTCGGCCTGGTCAACACTGGGGTCATTTCCAGCGCTCTGCACATGCTTTGCCTGTTGCTTTGTGTGTGCTCTGTATTTGCCCCCGGGAGTCCCATAGACCTCAGCGTACTCAATATAGGGAATGTGTCGGATGTGGGTGGAATGACTGGAGGTCATCAGAGGCACGGATACCCATTGCGTGGAGGTATCAATCAGCCTCTGCTGCCCGACCGTTCCTCCATTCACTGGACCAATAACACCGTGCTGTTTGAGAATGCACCGGCAGGGACAGAACCAGAGTCTTATATATCCATCATCCTGCTGTTTCTTGGAGTCATTACAGCTCGAGTTGGTCTATGGTCATTTGACCTGACAGTGACTCAGCTCCTGCAGGAGAGCATCTGTGAATCAGAGCGAGGGGTGGTGAACGGTGTCCAGAGCTCCATGAACTACCTAATGGACCTGCTGCACTTTCTCATGGTCATCGCTGCGCCTCAGCCACAACACTTTGGCATTCTTGTCATCATCTCCGTCCTGTTCATTTTTACGGGACACACCATGTACTTCCTGTACGCCAGGAAAGCCAAGAGGAAACCACGTACAAACACTTGAGCAACACTGCTCTGCTTGTTGCTCACCAGCTTGTGAATGTGTCTCCATTCCTGTACTGTTTTCAGCTGCACTTACACAAAAGTTACTCTATCCAGATCactatactaaaaaaaaaaacaaatctgttgCTGTGATCTCTTATAACTGGGAGGAACAAAAAGGGTTTGGCAGCAACGCATTACTCAGGTCAACAAAATCAGGAAACAGCGCCTCCTGCTGACAGAAAAAAGCAACTTCATCAGTATCAGAGACCCCGTTTGCAAGTGGGCCATTCTAAAAACAGATCTAAATGGGATCTGAAAAGAGGTTGTAATTTCAAGCTCATTTCTCCAGCCTCCTAAAGTTAAACTATTGAGTTTTATcagttttgaatccattcagctgatctccaggtctggcaggagcacttttagcttcgCTTAGCATAGTTTATTGAATTAGACCAGGGGtaggcaaacttggtcctggaaggactgtacagtttaaagcagcggtcacactgggcttttcctctcaTGGACTTCCATTCAAACGctcgcaaatgcgtcagaccggaaatgcagggtcatgcgtcacttgactgcgtgagaccaatcaaggatcaaaacatgacatctctggacagaaatttaaaacatggagcaatcgctcgcttttaaaaatgtctaatcctgccccttttcgtaGCGCCGCATGACAGAaaatcgcatgctcaaactctaatgtgacaaCAGCTTAACtgcaactctaatcaaacacacctgcttatagatttcttgtgaccattaagacactgattggcatgttcaggtgtttttgattagagttaaactatgcaggacaccggcactccatgaccaagtttgcccacccctggattagaccaatagcatctcactcaaaaaattaattgtattatcctTCTGTGGGTACATCATGCACTaagaaaaacagaaaatgaaaagttgttattttctaggctgatatgacTAGGGATGACTAGCATTACCTCGTAATAgtcaagaaactttgctgccataccattGGCTGCTGCAGGCGCAAAGATATTATGTAGCCCCTAAACTTGTTGgctaatatcattgtgcctgctgcagccatggtaaaGCAGCAAGGTTCCTTGATTATTTCACTTGAATGAGAATATAGTTCTTAGAcatattgacctagaaaatagcaacttctcATTTTCTGTCGGTCATAgtacaaaaatgtaactacagaagagtcaaactttaaataggaaaattattaaaactctttgaattatgctaagctaaacatgCTAAATTGTTTAACTATAGTGGAGTTGaacctatttttaaaattagtatTCCTTTAAACACTACAAGACATGTTGTTGAAATGCGCTGAACAAATCTTCAAGTTTTGTTTAAACATGACAAGTGTCAACATGACTTATAATGTTTGAATTAGTTTAGTAGGTACAGAGCAGGTAGTCTCTGGTGGCTGTTTGAATGTGTTCGATATTGTGAATATCTACATTACAGGcttgtttacacctggtattaacaATGCAATAGGagatcttggaaaatgctaacatTAGCCTCGTAGCAATGAAAGCCTACATCCCACACTGCAAATCAccatccaaagccatgcctcctgaatAAATAAACTTTCACTATACAACATCACTGTAATACATTACGTAACTTTTTTTCAAAGTTAAACTTTATAATACAATTAGTAATTACAAtagcaaactttaaaaaaaaggtaGGTTTTTGATGTTTACCTTCCATTCTTTATCTAAACCTCATCTGTGAATGTGCTGATGATGTAATCTGTAATTGATCTGTAATTGCAGAGGTATGAAATCAAATATTTTCAGGACAAACATTGTGATTGGACAAACTTAACTTGGTCTACATCTTCCACAGAATATTAAAAGACATATAGTTTTGGAccacttaattatattattgttaccAGAATgcgaagagacttttaaccagcataacaaaaatagtttctgaagacaatcacctaggCCACCCTAAAAGTACTTATTTATTTGTAGATCTGATCACAAATGGAAAATCTGATCAACCAAAATGCTTAATACGAGCTGTAAACGGGCCCCTAGAAGTTAATAAGTGTCTTAAAATGCACAGTATTACCACAAGAACATGACTAAACACAGCTGACACAACATGTTTTCATTGATCATTAGCCAGGCAAACACCTTTTTTGTAAATCTTCTCACATTTGTCAACTTACCAGCACGTTGCCACCaggcgtttttttattttattttattttttattaaatatcagTAAATGTCTCTTTTTTTCATGATTACTTGGTTTCTGAATAAAGCACACAAAGTACAAATCTCGTCCAACAGACAAAAGATGTTTTTTACAGCATATAAGGAgactatctttctttcttttttgtgctTTTAACTGAATGATTAATCTTTTAGTTTGATCCCTAACTTTTCAAGTGAAATATTAGTGAGTTTTAACAAGACCGTGGACTTTAATGTATCTGTTGcatgtttatataattatcatgTCAAGGTCTTTTAACTGACTACTATAACTGAGTGTTCTTTAGAGTTCAAAATGGATGAAGACAGAATCTTATACCTCAGCACTTAACTGTTATGTTTTGAACTCTAGCTTAAACTTATTTGTGGACAGTAACTACAGAAGTAATGGTTAACAGATACGTAAAATATTCAGACTGCATTTCACCTGTTTAATTTgtgttaataatatattatatggaTTATGAGACAGTTCTTTTCACTGATTATTTTTACTGCTGATGTGTAATGTTAAATGTTGTTTGAGGACTCTTTAAGTGTCAGACAGTTCAATGAAAACCAATAAAATTGCTTTGAGAAGGCATGCCGAAAGCAGtgtttttttgttgaaatatatACTCAGTCtatatatatcgtcaccttgtaattaaaaggttctatctgcttTGTGAATGATTtaaagatattgagcttcaaagattttacatttcatagcaaa

Function

symbol description
si:ch211-254p10.2 Predicted to enable iron ion transmembrane transporter activity. Predicted to act upstream of or within iron ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0034755 iron ion transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005381 iron ion transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100922-17 Predicted to enable iron ion transmembrane transporter activity. Predicted to act upstream of or within iron ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000056750

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019624 False 315 mRNA 0.43 2 19013018 19013463
TCONS_00019625 False 1125 mRNA 0.52 5 19013257 19018299
TCONS_00019626 True 4217 mRNA 0.40 3 19014886 19023116

Neighbor

gene id symbol gene type direction distance location
XLOC_009828 slc6a19b coding upstream 14469 18974064 ~ 18998549 (+)
XLOC_009827 rxrbb coding upstream 440143 18534834 ~ 18572875 (+)
XLOC_009826 NA coding upstream 500819 18502566 ~ 18512199 (+)
XLOC_009825 si:dkey-17m8.2 coding upstream 860017 18142127 ~ 18153001 (+)
XLOC_009824 rorc coding upstream 924994 17913936 ~ 18088024 (+)
XLOC_009830 rapgef5b coding downstream 6181 19029297 ~ 19151800 (+)
XLOC_009831 NA coding downstream 352518 19375634 ~ 19412421 (+)
XLOC_009832 NA coding downstream 357750 19380866 ~ 19381292 (+)
XLOC_009833 NA coding downstream 485622 19508738 ~ 19513991 (+)
XLOC_009834 sp8b coding downstream 513498 19536614 ~ 19538776 (+)
XLOC_009821 NA non-coding upstream 1342561 17669300 ~ 17670457 (+)
XLOC_009820 NA non-coding upstream 1346087 17665762 ~ 17666931 (+)
XLOC_009819 NA non-coding upstream 1411118 17600877 ~ 17601900 (+)
XLOC_009818 FP015958.1 non-coding upstream 1442084 17570810 ~ 17570934 (+)
XLOC_009837 BX005389.4 non-coding downstream 663597 19686713 ~ 19715210 (+)
XLOC_009838 BX005389.1 non-coding downstream 681308 19704424 ~ 19704538 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_07463735_07471367 NA coding CI01000016 null 7463735 ~ 7471828 (+)