G226967


Basic Information

Item Value
gene id G226967
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 3036595 ~ 3046469 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU257532
TGTTCCTCCTCAGAACACCACCACTGTCCAGTTCAACCCTGTATGATCGTTTGTTAACCGGTTCCAGAACTGTTGCTTTCTGCCAAACCTTTTGTGCCTGTGTTAGTTGTACTCTCACTTGGTCACCTGGTTTCAGGATGTTCATGTCTTTTGTGTGTCTGTTGTAGTACATTTCCTGTCGTCTTTGATTTAGTCTCAGTCCTTGTGTGGTGTCTACTACTTTTGGCTTCAACAGATTGCTGTGTGTTGGGAGGAGCGTACGTGTCCTCCTGCTTAACAGTCTTTGAGCAGGGCTTGCATTCAGACCCTGCGAGGGAGTGTTTCTGTGATCTAATATCGCCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU257532 True 342 lncRNA 0.46 2 3036595 3046469

Neighbor

gene id symbol gene type direction distance location
CI01000053_03013700_03026612 RAP1GAP2, RAP1GAP2A coding downstream 9983 3013700 ~ 3026612 (-)
CI01000053_02968381_02979969 GUCY2F coding downstream 56549 2968223 ~ 2980046 (-)
CI01000053_02905181_02934126 GDPD5A, GDPD5B, GDPD5 coding downstream 102469 2904675 ~ 2934126 (-)
CI01000053_02862161_02873752 NEK8 coding downstream 162843 2861731 ~ 2873752 (-)
CI01000053_02817187_02856529 TRAF4A, TRAF4 coding downstream 179947 2815866 ~ 2856648 (-)
CI01000053_03072131_03076683 NA coding upstream 25520 3071989 ~ 3076683 (-)
CI01000053_03120615_03122486 NA coding upstream 73466 3119935 ~ 3122486 (-)
CI01000053_03142995_03145565 ARHGEF26 coding upstream 96526 3142995 ~ 3145565 (-)
CI01000053_03304977_03312227 NA coding upstream 257905 3304374 ~ 3312639 (-)
CI01000053_03403259_03403534 NA coding upstream 356568 3403037 ~ 3404029 (-)
G226946 NA non-coding downstream 75370 2958334 ~ 2961225 (-)
G226914 NA non-coding downstream 190413 2841623 ~ 2846182 (-)
G226925 NA non-coding downstream 257919 2777975 ~ 2778676 (-)
G226919 NA non-coding downstream 269093 2767252 ~ 2767502 (-)
G226906 NA non-coding downstream 271242 2765113 ~ 2765353 (-)
G227003 NA non-coding upstream 134876 3181345 ~ 3181577 (-)
G227004 NA non-coding upstream 135534 3182003 ~ 3182298 (-)
G227042 NA non-coding upstream 175769 3222238 ~ 3308690 (-)
G227008 NA non-coding upstream 187958 3234427 ~ 3234738 (-)
G227049 NA non-coding upstream 349299 3395768 ~ 3490909 (-)
G226963 NA other downstream 39327 2996717 ~ 2997268 (-)
G226826 NA other downstream 469523 2565892 ~ 2567072 (-)
CI01000053_02225226_02226481 YPELD, YPEL2B, YPEL1, YPELC, YPEL2 other downstream 799199 2225210 ~ 2226481 (-)
G225812 NA other downstream 1569863 1459595 ~ 1466732 (-)
G225574 NA other downstream 2489727 543647 ~ 546868 (-)
CI01000053_03551506_03551965 NA other upstream 503864 3550333 ~ 3552847 (-)
G227604 NA other upstream 1040768 4087237 ~ 4087740 (-)
G228651 NA other upstream 2738014 5784483 ~ 5787690 (-)
G228750 NA other upstream 2885123 5931592 ~ 5932241 (-)

Expression


Co-expression Network