Gene
RNA
| Item | Value |
|---|---|
| gene id | G227047 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000053 |
| NCBI id | null |
| chromosome length | 7014373 |
| location | 3484863 ~ 3547141 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU257629 | True | 1278 | lncRNA | 0.38 | 3 | 3484863 | 3547141 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000053_03456147_03457909 | NA | coding | downstream | 26664 | 3456035 ~ 3458199 (-) |
| CI01000053_03403259_03403534 | NA | coding | downstream | 80834 | 3403037 ~ 3404029 (-) |
| CI01000053_03304977_03312227 | NA | coding | downstream | 172224 | 3304374 ~ 3312639 (-) |
| CI01000053_03142995_03145565 | ARHGEF26 | coding | downstream | 339298 | 3142995 ~ 3145565 (-) |
| CI01000053_03120615_03122486 | NA | coding | downstream | 362377 | 3119935 ~ 3122486 (-) |
| CI01000053_03551506_03551965 | NA | coding | upstream | 4177 | 3550333 ~ 3552847 (-) |
| CI01000053_03558891_03566444 | NA | coding | upstream | 11642 | 3558783 ~ 3569352 (-) |
| CI01000053_03592810_03602102 | NA | coding | upstream | 45514 | 3592655 ~ 3602437 (-) |
| CI01000053_03620673_03622682 | NA | coding | upstream | 73099 | 3620240 ~ 3622685 (-) |
| CI01000053_03625343_03653163 | NA | coding | upstream | 77829 | 3624970 ~ 3653334 (-) |
| G227174 | NA | non-coding | downstream | 56541 | 3405148 ~ 3428322 (-) |
| G227184 | NA | non-coding | downstream | 64047 | 3413501 ~ 3420816 (-) |
| G227042 | NA | non-coding | downstream | 176173 | 3222238 ~ 3308690 (-) |
| G227008 | NA | non-coding | downstream | 250125 | 3234427 ~ 3234738 (-) |
| G227004 | NA | non-coding | downstream | 302565 | 3182003 ~ 3182298 (-) |
| G227069 | NA | non-coding | upstream | 56757 | 3603898 ~ 3606489 (-) |
| G227046 | NA | non-coding | upstream | 70467 | 3617608 ~ 3620177 (-) |
| G227236 | NA | non-coding | upstream | 88576 | 3635717 ~ 3636283 (-) |
| G227051 | NA | non-coding | upstream | 159398 | 3706539 ~ 3707610 (-) |
| G227071 | NA | non-coding | upstream | 182337 | 3729478 ~ 3729711 (-) |
| G226963 | NA | other | downstream | 487595 | 2996717 ~ 2997268 (-) |
| G226826 | NA | other | downstream | 917791 | 2565892 ~ 2567072 (-) |
| CI01000053_02225226_02226481 | YPELD, YPEL2B, YPEL1, YPELC, YPEL2 | other | downstream | 1247467 | 2225210 ~ 2226481 (-) |
| G225812 | NA | other | downstream | 2018131 | 1459595 ~ 1466732 (-) |
| G225574 | NA | other | downstream | 2937995 | 543647 ~ 546868 (-) |
| G227604 | NA | other | upstream | 540096 | 4087237 ~ 4087740 (-) |
| G228651 | NA | other | upstream | 2237342 | 5784483 ~ 5787690 (-) |
| G228750 | NA | other | upstream | 2384451 | 5931592 ~ 5932241 (-) |
