G226399


Basic Information

Item Value
gene id G226399
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 3620798 ~ 3697529 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU256881
GGAGTAAGGGAGTAATCACTCTTTGACGTCTCAGAGCCTCGTCCTGAATAACAATGGCACAGTTAAACAAAGATCACTAGAAACATGAAACTGCATGGGTGAACTTTAAAAGAGTATCTAAAGGAACTGATGTTTGGTTTATTTTCCTAATTGAGTTTACAAAACATTTACCAGCAGCATGTGTCTTCCTCCATATGAGTGCAGGTATGATGAGAACAGCCACACACATTAACACCAGCACACAGAAAACTACATACAGACTAATGGATCCTGGGTCAGATTCATTCACATCCAAACGTAATGTCCAGTTTGTTGTCCAGACTGAGGTGCTCCATTGTACAGTTGTATGTATGTTCCTCACGTACTTCTTCTGCGCTGATCTCCAAAATCTTCCTCATCTGGTAAGTTCCGTCTCCATTGGGAAGAATCTCTCCTCCTGTGATCTGATCATCATCCACAAGCTGACCATCTCTGAACAGAGTCAGGTTAATGTGACGGGGGTAAAAACCAGTGGCCAGACAGCTGATCTGAAGCCCTTGAGAGTCTGTGAGTTTCTTCCTCATAAGTCTGACTCTGGGTTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU256881 True 582 TUCP 0.43 2 3620798 3697529

Neighbor

gene id symbol gene type direction distance location
CI01000053_03602535_03605174 NA coding upstream 15258 3602490 ~ 3605540 (+)
CI01000053_03587596_03590525 NA coding upstream 30240 3586782 ~ 3590558 (+)
CI01000053_03572527_03585944 NA coding upstream 34527 3571588 ~ 3586271 (+)
CI01000053_03545885_03548117 NA coding upstream 72009 3545885 ~ 3548789 (+)
CI01000053_03520283_03525417 NA coding upstream 95336 3520032 ~ 3525462 (+)
CI01000053_03744819_03746561 FZD10 coding downstream 45616 3743145 ~ 3747253 (+)
CI01000053_03791537_03801726 PIWIL1 coding downstream 94008 3791537 ~ 3801726 (+)
CI01000053_03810170_03813896 NA coding downstream 112641 3810170 ~ 3814136 (+)
CI01000053_03938224_03984584 RIMBP2 coding downstream 239294 3936823 ~ 3985703 (+)
CI01000053_03991499_04013196 NA coding downstream 293970 3991499 ~ 4013333 (+)
G226451 NA non-coding upstream 42482 3578043 ~ 3578316 (+)
G226438 NA non-coding upstream 79215 3534175 ~ 3541583 (+)
G226443 NA non-coding upstream 79430 3540835 ~ 3541368 (+)
G226392 NA non-coding upstream 109413 3508680 ~ 3511385 (+)
G226424 NA non-coding upstream 147203 3464216 ~ 3473595 (+)
G226397 NA non-coding downstream 196 3697725 ~ 3700465 (+)
G226476 NA non-coding downstream 3511 3701040 ~ 3701264 (+)
G227289 NA non-coding downstream 288485 3986014 ~ 3990403 (+)
G227308 NA non-coding downstream 293014 3990543 ~ 3990883 (+)
G226347 NA other upstream 345887 3272374 ~ 3274911 (+)
G226292 NA other upstream 574015 3036602 ~ 3046783 (+)
CI01000053_02594164_02594541 DYNLL6, DYNLL1, DYNLL2A, DYNLL2, BRAFLDRAFT_114344, DYL1, DYNLL1.S, BRAFLDRAFT_130244, DYNLL1.L other upstream 1025331 2592558 ~ 2595467 (+)
G225952 NA other upstream 1747503 1872874 ~ 1873295 (+)
G227317 NA other downstream 717422 4414951 ~ 4415593 (+)
G228257 NA other downstream 1678024 5375553 ~ 5378449 (+)
CI01000053_05471449_05512831 LRRC75B other downstream 1811715 5471449 ~ 5513074 (+)
CI01000053_06725452_06758944 NA other downstream 3025670 6725452 ~ 6758944 (+)

Expression


Co-expression Network