G227563


Basic Information

Item Value
gene id G227563
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 3963730 ~ 3965498 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU258255
TTGGAATGATATGTGCATTTTCACCTGATCAAGCAGAAGCTAATTTGACACTTTAAACAGTATAAATTTATGTAATACTTATACATAGAGTACACAAACAAACCCTGTCTTTATTTAATAATAATAACAAACACATTAAACCATGGCAGTATATTCCAAGAGGTGAACACTTCAGGCAAGGCAAACAAATACACAACGTATATATCTGCACATATGTGATTGTCATATGCAATAAATCGAAGAATCTGCTAAATAATCCTGTCAATTCCAAGTAACAAGAGCACCTTCTACCACATAGAGTAATCCAGATCGAATACTACTAAATACAAATGCATAGTGATGCAGTACTTGAAACTGAACAACACAGTTTGCAACACCTGGAGAGTGTAAAGCATATCAGATCGTCAACTCATGCATTGCGTGTGCAGCCTCAGATTAAGCCATTCAGATGTATCGAGCTTTGTATGACTGGACAGGCTGATACAAAGCTGGCTAAATGACTGGATGACGTCGAAGTTCGGTAGTGCAAAGCGACCCACTTTTAGGACCCAGGAGAGACTGAGGATGGGTTGACCTGTTAAGATCCTGCCGCTCAAGCTTTGTGTACAACACCAGAGGTCTAACACCCCCCGTTTTAAATTCAAAATCACGAAAACACAAAAACCCAGTGCTAGCCATATTCAGGACAAATCCAAGGAGTTACTTAATAACAAAAATGTGCTTACCTCTAAAAAACCACCTTAACCAAACTGCAGTTGGCTGTTCAAGCCAATTCTACAAGGTTGAAGTGCCAACCAGCTAGTACCACCCCCTCGGAGGAGCCCTACAGACCACGGCATACTCCATCCCCCTTCGTCTGTCCCAGCCTCTAGCCTGCGGCCCTGTGGCCCACGCCCAAGACAGACGGCGGCCGGTAGGGTGTCTGTTCCATACCTTAAGCGTGTTGTGTGAGTTGATGCTGCGGCGGCGGCCTTCTTCCAGCTGCATCTCCGAGTAGAGCTCCTCCTCATCCTCCTCCATGATATCAGACAGATCGGAGCCCCGACTGCTCTCAGTGTAGTACTCCTCACTGTGGCTGTATTGATGATGGTGTCTGCCCAACTCAGAACCTCTGAGAAACTCATCCACAGAAGCTCCTCTTCGCCTGGCGTGGGGGGAATCATACCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU258255 True 1168 lncRNA 0.45 2 3963730 3965498

Neighbor

gene id symbol gene type direction distance location
CI01000053_03823296_03825234 NA coding downstream 138402 3823094 ~ 3825328 (-)
CI01000053_03696522_03699590 NA coding downstream 264031 3696458 ~ 3699699 (-)
CI01000053_03665103_03666630 NA coding downstream 296030 3664590 ~ 3667700 (-)
CI01000053_03625343_03653163 NA coding downstream 310396 3624970 ~ 3653334 (-)
CI01000053_03620673_03622682 NA coding downstream 341045 3620240 ~ 3622685 (-)
CI01000053_04276080_04288879 FAM101A coding upstream 310542 4276040 ~ 4288879 (-)
CI01000053_04415119_04415646 NA coding upstream 449563 4415061 ~ 4415646 (-)
CI01000053_04423076_04430502 RASSF2A coding upstream 457578 4423076 ~ 4430502 (-)
CI01000053_04450920_04470110 SLC23A2 coding upstream 485346 4450844 ~ 4470110 (-)
CI01000053_04494346_04508379 KCNIP3A, KCNIP3 coding upstream 528824 4494322 ~ 4508640 (-)
G227053 NA non-coding downstream 218107 3734124 ~ 3745623 (-)
G227071 NA non-coding downstream 234019 3729478 ~ 3729711 (-)
G227051 NA non-coding downstream 256120 3706539 ~ 3707610 (-)
G227236 NA non-coding downstream 327447 3635717 ~ 3636283 (-)
G227046 NA non-coding downstream 343553 3617608 ~ 3620177 (-)
G227573 NA non-coding upstream 20494 3985992 ~ 3990212 (-)
G227578 NA non-coding upstream 32941 3998439 ~ 4004359 (-)
G227581 NA non-coding upstream 40826 4006324 ~ 4039233 (-)
G227605 NA non-coding upstream 119549 4085047 ~ 4085957 (-)
G227650 NA non-coding upstream 162724 4128222 ~ 4128480 (-)
CI01000053_03551506_03551965 NA other downstream 410759 3550333 ~ 3552847 (-)
G226963 NA other downstream 966462 2996717 ~ 2997268 (-)
G226826 NA other downstream 1396658 2565892 ~ 2567072 (-)
CI01000053_02225226_02226481 YPELD, YPEL2B, YPEL1, YPELC, YPEL2 other downstream 1726334 2225210 ~ 2226481 (-)
G225812 NA other downstream 2496998 1459595 ~ 1466732 (-)
G227604 NA other upstream 121739 4087237 ~ 4087740 (-)
G228651 NA other upstream 1818985 5784483 ~ 5787690 (-)
G228750 NA other upstream 1966094 5931592 ~ 5932241 (-)

Expression


Co-expression Network