G227578


Basic Information

Item Value
gene id G227578
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 3998439 ~ 4004359 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU258273
GGCTGTTTCCTGAGGTATAGTCTTGTTTGGAAGGTTAAACGATAGAGACTGAAGGAGGTCTAGTGCTTGTAACTGCATGGGTTCCTGAAGTCTCCGAATTTCCTCTGTCAGGTTTGTGGAGGAAGGTCGAGGCATCTCTGTGGTTCTCTGTAACTGAGAATCTGTCGCAGCAGTGACACCGATGGATGCTTCGGTTGGGAAGGTGGACATCACATTCTCACCAATGGCTGCTTTGTAGTACATCCAGATATCCTGAGGGGACAGGGCTCTCTCCCAAATCACAAACTCATCGAAGGCACCCGTGGCATAGTGGCCGTAACTCCCGGTGTTTCCTGTGCCAATGACCAGATCGGCATAGGGATCACCATAGTTATGGGAAACACTTCCTGTGGGGTCTCCGGTGCTGTATGTTCCATTAATGTAGACCTTTAATCCCTCCGTTTGGGTCCATGTGAAGAGCACATGTGTCCAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU258273 True 472 lncRNA 0.50 3 3998439 4004359

Neighbor

gene id symbol gene type direction distance location
CI01000053_03823296_03825234 NA coding downstream 173111 3823094 ~ 3825328 (-)
CI01000053_03696522_03699590 NA coding downstream 298740 3696458 ~ 3699699 (-)
CI01000053_03665103_03666630 NA coding downstream 330739 3664590 ~ 3667700 (-)
CI01000053_03625343_03653163 NA coding downstream 345105 3624970 ~ 3653334 (-)
CI01000053_03620673_03622682 NA coding downstream 375754 3620240 ~ 3622685 (-)
CI01000053_04276080_04288879 FAM101A coding upstream 271681 4276040 ~ 4288879 (-)
CI01000053_04415119_04415646 NA coding upstream 410702 4415061 ~ 4415646 (-)
CI01000053_04423076_04430502 RASSF2A coding upstream 418717 4423076 ~ 4430502 (-)
CI01000053_04450920_04470110 SLC23A2 coding upstream 446485 4450844 ~ 4470110 (-)
CI01000053_04494346_04508379 KCNIP3A, KCNIP3 coding upstream 489963 4494322 ~ 4508640 (-)
G227573 NA non-coding downstream 8227 3985992 ~ 3990212 (-)
G227563 NA non-coding downstream 32941 3963730 ~ 3965498 (-)
G227053 NA non-coding downstream 252816 3734124 ~ 3745623 (-)
G227071 NA non-coding downstream 268728 3729478 ~ 3729711 (-)
G227051 NA non-coding downstream 290829 3706539 ~ 3707610 (-)
G227581 NA non-coding upstream 1965 4006324 ~ 4039233 (-)
G227605 NA non-coding upstream 80688 4085047 ~ 4085957 (-)
G227650 NA non-coding upstream 123863 4128222 ~ 4128480 (-)
G227622 NA non-coding upstream 216905 4221264 ~ 4255705 (-)
G227617 NA non-coding upstream 230159 4234518 ~ 4236587 (-)
CI01000053_03551506_03551965 NA other downstream 445468 3550333 ~ 3552847 (-)
G226963 NA other downstream 1001171 2996717 ~ 2997268 (-)
G226826 NA other downstream 1431367 2565892 ~ 2567072 (-)
CI01000053_02225226_02226481 YPELD, YPEL2B, YPEL1, YPELC, YPEL2 other downstream 1761043 2225210 ~ 2226481 (-)
G225812 NA other downstream 2531707 1459595 ~ 1466732 (-)
G227604 NA other upstream 82878 4087237 ~ 4087740 (-)
G228651 NA other upstream 1780124 5784483 ~ 5787690 (-)
G228750 NA other upstream 1927233 5931592 ~ 5932241 (-)

Expression


Co-expression Network