G227581


Basic Information

Item Value
gene id G227581
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 4006324 ~ 4039233 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU258277
GGTAACGCTGGTTACGGATGGTGCTAACGGACGACAACACGGCAAAGGTCACCAGTGTAATTGCCAGGCAGAAAATAGAGATAGAGCAGCCGATGTAACTAATTGCGGACAGCGCCACCTTGTGGGCCTTTGAGAGCTCCATGGGAACCACTTGCATAAGGATGGCGAAGTTTGTCAGATGGTTACACAAGCAAATGGAGAAGGACAGGTTTCCATCAGCTCTCACACACCCCTCATTGGACCACACACCTTCCTTGGAGCTGTAGTCTAGGAAAGCGCAGTACAGGAACACTTTATTACTTTGGTTTAAGGCCAGGAGCTGCTGTTCTTTACTCAGCTGATGCGTGAGGACGATCCGGATGAGCGGCTCAGTGGACAGGTTAAGTGACAGGGCAGGAGATGGCTCCACCTTCAGAGAAATAAGGTGACTGGCCATCTGGATCTTATGATCTTTATAATCCACCGCCTCATTTATCCTTGTTTGTAGAGGGCTGATTTTTTTGTAGTAGTTGTGCATTTTGTGGTAGAAAAGTCCCACGATCGTGGTCTGAGACTGCATTGTAAGGGCCTCTCCTGGTACTGAGATGTAACTCTTCCCTTGTGTGGGGAACCGGTAGCTGGGCAGATTGTAGTTCTGTGGGATCTTCATCAGAGAGTAATCTGCCACAGAACTCTTGCCCCCTATGGCCAGAGGAGCCTCTGAGTCGGGGCTGGACCGAAGCTTGGAGGCCATTTGCAGCATCACCTTATCCACAGTCTCCACCAGCCCATTGACCACTGGACTCAACTCATCGTTTTCTCTCCAGTCGCTGGCGGTTATGACCTCATCCACACTCTTCAGTAGAGTCTACAACACACAGAGCAGAATAAAGAAGAGTTTAAAACGTGTGTAAAAGCAACAGTGAAGGTAATTCAGTTTGGGGTTCTAATTGGCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU258277 True 935 lncRNA 0.49 10 4006324 4039233

Neighbor

gene id symbol gene type direction distance location
CI01000053_03823296_03825234 NA coding downstream 180996 3823094 ~ 3825328 (-)
CI01000053_03696522_03699590 NA coding downstream 306625 3696458 ~ 3699699 (-)
CI01000053_03665103_03666630 NA coding downstream 338624 3664590 ~ 3667700 (-)
CI01000053_03625343_03653163 NA coding downstream 352990 3624970 ~ 3653334 (-)
CI01000053_03620673_03622682 NA coding downstream 383639 3620240 ~ 3622685 (-)
CI01000053_04276080_04288879 FAM101A coding upstream 236807 4276040 ~ 4288879 (-)
CI01000053_04415119_04415646 NA coding upstream 375828 4415061 ~ 4415646 (-)
CI01000053_04423076_04430502 RASSF2A coding upstream 383843 4423076 ~ 4430502 (-)
CI01000053_04450920_04470110 SLC23A2 coding upstream 411611 4450844 ~ 4470110 (-)
CI01000053_04494346_04508379 KCNIP3A, KCNIP3 coding upstream 455089 4494322 ~ 4508640 (-)
G227578 NA non-coding downstream 1965 3998439 ~ 4004359 (-)
G227573 NA non-coding downstream 16112 3985992 ~ 3990212 (-)
G227563 NA non-coding downstream 40826 3963730 ~ 3965498 (-)
G227053 NA non-coding downstream 260701 3734124 ~ 3745623 (-)
G227071 NA non-coding downstream 276613 3729478 ~ 3729711 (-)
G227605 NA non-coding upstream 45814 4085047 ~ 4085957 (-)
G227650 NA non-coding upstream 88989 4128222 ~ 4128480 (-)
G227622 NA non-coding upstream 182031 4221264 ~ 4255705 (-)
G227617 NA non-coding upstream 195285 4234518 ~ 4236587 (-)
G227618 NA non-coding upstream 205525 4244758 ~ 4246698 (-)
CI01000053_03551506_03551965 NA other downstream 453353 3550333 ~ 3552847 (-)
G226963 NA other downstream 1009056 2996717 ~ 2997268 (-)
G226826 NA other downstream 1439252 2565892 ~ 2567072 (-)
CI01000053_02225226_02226481 YPELD, YPEL2B, YPEL1, YPELC, YPEL2 other downstream 1768928 2225210 ~ 2226481 (-)
G225812 NA other downstream 2539592 1459595 ~ 1466732 (-)
G227604 NA other upstream 48004 4087237 ~ 4087740 (-)
G228651 NA other upstream 1745250 5784483 ~ 5787690 (-)
G228750 NA other upstream 1892359 5931592 ~ 5932241 (-)

Expression


Co-expression Network