XLOC_009833


Basic Information

Item Value
gene id XLOC_009833
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 19508738 ~ 19513991 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021917
TAAAGTAACACTTTTAAGTAtctttatttaatgctgtcaccgtgctgctgtcatgtccgtCCACTGGCTGTTTTTGTCGCGgaagcaacagcgaggatgactggaggagagcCGGCTCGATCTGGTCAATGGCAGCAGGAGACACTGAGGATGGCGAATTCATTTGATGGTGCTAAAGGATCTAAACTGTTGATATTCGCAAGGACTGTGTAGCATCTTTCGGTGGGCTTTCTGGTAAGTGCCTGCTAAAATGGATAACAGACATTTTTAACATAAAcgtgaaatatttaataaatttcatACAAGACTTGTTTTGAGTATATAGGAGCATGCCATTGTTGCAGTAAAGAAGAGTGCCCAGTGTCTGCTGATCTAAGCACAGTTACAGTGGTTTTTTCAGTCTGTGACATCTAAATTCTCTTCTTGTCAACTGGGCACAAATTATAAGCCAAGAGACATCAGCTGACTGATTAAAAATAAGTGTCAGGCTATGGAAGGACAAAGGAATGTCTGTGAATAAAAACGAAAACAAAAATCAATACACCTCTCAAGTGAGCAGCATAGAAAGTATAAAACATACTTGAAGGACATCAACTATAACGCTGTTAAATACTAAATACAGTTTGAATTTATGATCattcagatattttaaaatgtttgcacaATCTAAGTCAGAATGAAATGTAG

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001707 mesoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0000307 cyclin-dependent protein kinase holoenzyme complex cellular_component
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021917 True 687 lncRNA 0.38 2 19508738 19513991

Neighbor

gene id symbol gene type direction distance location
XLOC_009831 NA coding upstream 96317 19375634 ~ 19412421 (+)
XLOC_009832 NA coding upstream 127446 19380866 ~ 19381292 (+)
XLOC_009830 rapgef5b coding upstream 356938 19029297 ~ 19151800 (+)
XLOC_009829 si:ch211-254p10.2 coding upstream 485622 19013018 ~ 19023116 (+)
XLOC_009828 slc6a19b coding upstream 510189 18974064 ~ 18998549 (+)
XLOC_009834 sp8b coding downstream 22623 19536614 ~ 19538776 (+)
XLOC_009835 macc1 coding downstream 123393 19637384 ~ 19677375 (+)
XLOC_009836 tmem196b coding downstream 163493 19677484 ~ 19681282 (+)
XLOC_009837 BX005389.4 coding downstream 172722 19686713 ~ 19715210 (+)
XLOC_009838 BX005389.1 coding downstream 190433 19704424 ~ 19704538 (+)
XLOC_009826 NA non-coding upstream 996539 18502566 ~ 18512199 (+)
XLOC_009821 NA non-coding upstream 1838281 17669300 ~ 17670457 (+)
XLOC_009820 NA non-coding upstream 1841807 17665762 ~ 17666931 (+)
XLOC_009840 CU855688.1 non-coding downstream 291030 19805021 ~ 19809117 (+)
XLOC_009847 NA non-coding downstream 1016134 20530125 ~ 20531772 (+)
XLOC_009848 NA non-coding downstream 1170949 20684940 ~ 20695517 (+)

Expression


Co-expression Network