XLOC_009834 (sp8b)


Basic Information

Item Value
gene id XLOC_009834
gene name sp8b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 19536614 ~ 19538776 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019632
GCACACCTCTAAAAAAACAGTGCTCtgattcataaatataaaaagatcCTCTGAGGAGGGCACTTTTGTGATGGCAACTTCACTTCTAGGGGTGAGTCTAAGGAGTTTCGTGCTGGTTTAATTAGTTTCCTTTATTGTCCTGCAGTGGGGATTAAAATTTCTTTGGTCAGCCGGGGAGAGAGTCACTTGATTATGTTTTAAGCGAGAGAAAGGAGCAGGAGTTGCATTTCTCAACTACGACATTGTATGTATAACACATATTGCTATTTCTATGCTGCGTTTTCGCTTTTGTGTTGCGTGTGCAATTGGCTGTTTCAGTTGACTGTTCTTCGCTACCATTCTTCAGGAGGAGCCGAGATTGGGGTCGACTCCTTTAGCCATGTTGGCTGCGACGTGTAACAAAATCGGGAGCCCGAGTCCTTCTCCTTCCTCGATTTCGGATAATTCATCTTCGTTCGGAAAAGGATTCCACCCGTGGAAACGAGCGACAGCCAGCAGCTGTAGTTTAGGATCCAGTTTATCCTCTTTCACTCGGAATGGTGGTGGTTTAAGCGACTCTTTTGGCACGAACACTTCTACGGGATCAAGTGCCTTTTCCTTAACTTCTGGTACTTCGTCCAACTCCCACTTCGGAAACGACTACTCCGTTTTCCAGACTTCTGTGTCAAATAACTCCCAAGAGCCAAGCCACCAACCCATGTTTATTTCAAAAGTGCACACATCCGTGGACAGTTTGCAGAGCATTTACCCGAGAATGAGCGTGGCGCATCCCTACGAGTCGTGGTTCAAGTCCTCACACCCTGGCATACCCACGGGGGATGTGGGCACCACGGGCGCGTCCGCGTGGTGGGACGTGGGAGCCGGTTGGATTGATGTGCAGAACCCGAATGGAGCTGCGCTCCAGACGTCCCTACACTCCGGTGGGCTGCAAACTTCTTTACACTCTCCTCTGGGCGGATACAACTCAGACTACTCGAGTTTAAGCCACTCTGCCTTCAGTACCAGCGCGTCCCCGCATCTCCTCACCACCGGGCAGCACCTCATGGACGGATTCAAACCGGTTCTCTCGTCTTACCCGGACTCCAGTCCTTCTCCTCTGGGTGGAGCGGGTGGTTCCATGTTGACAGGGGGTCCGACGGCCTCTTTGGCGGGGTCCCCGCGGTCTTCCGCGCGGCGCTACTCGGGCAGAGCGACGTGCGACTGTCCGAACTGTCAAGAAGCTGAGCGGCTGGGTCCGGCCGGCGCAAGCCTCCGCAGAAAGGGGCTGCACAGCTGTCACATCCCTGGCTGTGGGAAAGTGTACGGCAAAACGTCTCACCTCAAGGCTCATTTGAGGTGGCACACCGGGGAAAGGCCGTTTGTGTGTAACTGGTTATTCTGTGGAAAGAGGTTCACGCGCTCCGACGAGCTCCAGCGACATTTACGCACGCACACTGGCGAGAAGCGCTTCGCTTGTCCCGTGTGCAACAAGCGCTTCATGCGGAGTGACCACCTCAGTAAACATGTCAAAACGCACAGTGCTGGGGGCTCGTCAGGGTCGGGGTCTGGGGCGAGTGGAGGGAAACGAGGGAGTGACACCGACAGCGAGCACAGTGTGCCCGGTAGCCCCTCATGCCATTCGCCTGACCTGTTGCAAGCCCCCGAGTCTGTCCCGACCACTGGAATGAACGGCCGTGCAAGCTCCCTCGATTAATCCCGCTCTAAATGCCAAGCTCGAATGGACTAGTAACGTATTTGACGCCTCAGAAAATGTACTGTTCGCTCGGAAACACTTTCTAAAAACTTTCAAgttaacaaaaaatctaaaatgttttgcAAGTTTCCGATTAATGCACATTCAAATATGAATAACCTACATGAAACAACATGAACCAAAGTTTCATTTCTTTTTAACTAGTTGAATGTACATTAATGAATGTTAATTAGgcctatattttttttgttaacagttaaagttattataaagtgtcacCTGAGAAGGAACCGTGTGGCCATTTCACGTGGATGTTGTAAAGTGATTCAGtttacaattaaaatgtaattac
>TCONS_00019633
tgattcataaatataaaaagatcCTCTGAGGAGGGCACTTTTGTGATGGCAACTTCACTTCTAGGGGAGGAGCCGAGATTGGGGTCGACTCCTTTAGCCATGTTGGCTGCGACGTGTAACAAAATCGGGAGCCCGAGTCCTTCTCCTTCCTCGATTTCGGATAATTCATCTTCGTTCGGAAAAGGATTCCACCCGTGGAAACGAGCGACAGCCAGCAGCTGTAGTTTAGGATCCAGTTTATCCTCTTTCACTCGGAATGGTGGTGGTTTAAGCGACTCTTTTGGCACGAACACTTCTACGGGATCAAGTGCCTTTTCCTTAACTTCTGGTACTTCGTCCAACTCCCACTTCGGAAACGACTACTCCGTTTTCCAGACTTCTGTGTCAAATAACTCCCAAGAGCCAAGCCACCAACCCATGTTTATTTCAAAAGTGCACACATCCGTGGACAGTTTGCAGAGCATTTACCCGAGAATGAGCGTGGCGCATCCCTACGAGTCGTGGTTCAAGTCCTCACACCCTGGCATACCCACGGGGGATGTGGGCACCACGGGCGCGTCCGCGTGGTGGGACGTGGGAGCCGGTTGGATTGATGTGCAGAACCCGAATGGAGCTGCGCTCCAGACGTCCCTACACTCCGGTGGGCTGCAAACTTCTTTACACTCTCCTCTGGGCGGATACAACTCAGACTACTCGAGTTTAAGCCACTCTGCCTTCAGTACCAGCGCGTCCCCGCATCTCCTCACCACCGGGCAGCACCTCATGGACGGATTCAAACCGGTTCTCTCGTCTTACCCGGACTCCAGTCCTTCTCCTCTGGGTGGAGCGGGTGGTTCCATGTTGACAGGGGGTCCGACGGCCTCTTTGGCGGGGTCCCCGCGGTCTTCCGCGCGGCGCTACTCGGGCAGAGCGACGTGCGACTGTCCGAACTGTCAAGAAGCTGAGCGGCTGGGTCCGGCCGGCGCAAGCCTCCGCAGAAAGGGGCTGCACAGCTGTCACATCCCTGGCTGTGGGAAAGTGTACGGCAAAACGTCTCACCTCAAGGCTCATTTGAGGTGGCACACCGGGGAAAGGCCGTTTGTGTGTAACTGGTTATTCTGTGGAAAGAGGTTCACGCGCTCCGACGAGCTCCAGCGACATTTACGCACGCACACTGGCGAGAAGCGCTTCGCTTGTCCCGTGTGCAACAAGCGCTTCATGCGGAGTGACCACCTCAGTAAACATGTCAAAACGCACAGTGCTGGGGGCTCGTCAGGGTCGGGGTCTGGGGCGAGTGGAGGGAAACGAGGGAGTGACACCGACAGCGAGCACAGTGTGCCCGGTAGCCCCTCATGCCATTCGCCTGACCTGTTGCAAGCCCCCGAGTCTGTCCCGACCACTGGAATGAACGGCCGTGCAAGCTCCCTCGATTAATCCCGCTCTAAATGCCAAGCTCGAATGGACTAGTAACGTATTTGACGCCTCAGAAAATGTACTGTTCGCTCGGAAACACTTTCTAAAAACTTTCAAgttaacaaaaaatctaaaatgttttgcAAGTTTCCGATTAATGCACATTCAAATATGAATAACCTACATGAAACAACATGAACCAAAGTTTCATTTCTTTTTAACTAGTTGAATGTACATTAATGAATGTTAATTAGgcctatattttttttgttaacagttaaagttattataaagtgtcacCTGAGAAGGAACCGTGTGGCCATTTCACGTGGATGTTGTAAAGTGATTCAGtttacaattaaaatgtaattac
>TCONS_00019634
GGGATTAAAATTTCTTTGGTCAGCCGGGGAGAGAGTCACTTGATTATGTTTTAAGCGAGAGAAAGGAGCAGGAGTTGCATTTCTCAACTACGACATTGAGGAGCCGAGATTGGGGTCGACTCCTTTAGCCATGTTGGCTGCGACGTGTAACAAAATCGGGAGCCCGAGTCCTTCTCCTTCCTCGATTTCGGATAATTCATCTTCGTTCGGAAAAGGATTCCACCCGTGGAAACGAGCGACAGCCAGCAGCTGTAGTTTAGGATCCAGTTTATCCTCTTTCACTCGGAATGGTGGTGGTTTAAGCGACTCTTTTGGCACGAACACTTCTACGGGATCAAGTGCCTTTTCCTTAACTTCTGGTACTTCGTCCAACTCCCACTTCGGAAACGACTACTCCGTTTTCCAGACTTCTGTGTCAAATAACTCCCAAGAGCCAAGCCACCAACCCATGTTTATTTCAAAAGTGCACACATCCGTGGACAGTTTGCAGAGCATTTACCCGAGAATGAGCGTGGCGCATCCCTACGAGTCGTGGTTCAAGTCCTCACACCCTGGCATACCCACGGGGGATGTGGGCACCACGGGCGCGTCCGCGTGGTGGGACGTGGGAGCCGGTTGGATTGATGTGCAGAACCCGAATGGAGCTGCGCTCCAGACGTCCCTACACTCCGGTGGGCTGCAAACTTCTTTACACTCTCCTCTGGGCGGATACAACTCAGACTACTCGAGTTTAAGCCACTCTGCCTTCAGTACCAGCGCGTCCCCGCATCTCCTCACCACCGGGCAGCACCTCATGGACGGATTCAAACCGGTTCTCTCGTCTTACCCGGACTCCAGTCCTTCTCCTCTGGGTGGAGCGGGTGGTTCCATGTTGA
>TCONS_00019635
GGAGGAGCCGAGATTGGGGTCGACTCCTTTAGCCATGTTGGCTGCGACGTGTAACAAAATCGGGAGCCCGAGTCCTTCTCCTTCCTCGATTTCGGATAATTCATCTTCGTTCGGAAAAGGATTCCACCCGTGGAAACGAGCGACAGCCAGCAGCTGTAGTTTAGGATCCAGTTTATCCTCTTTCACTCGGAATGGTGGTGGTTTAAGCGACTCTTTTGGCACGAACACTTCTACGGGATCAAGTGCCTTTTCCTTAACTTCTGGTACTTCGTCCAACTCCCACTTCGGAAACGACTACTCCGTTTTCCAGACTTCTGTGTCAAATAACTCCCAAGAGCCAAGCCACCAACCCATGTTTATTTCAAAAGTGCACACATCCGTGGACAGTTTGCAGAGCATTTACCCGAGAATGAGCGTGGCGCATCCCTACGAGTCGTGGTTCAAGTCCTCACACCCTGGCATACCCACGGGGGATGTGGGCACCACGGGCGCGTCCGCGTGGTGGGACGTGGGAGCCGGTTGGATTGATGTGCAGAACCCGAATGGAGCTGCGCTCCAGACGTCCCTACACTCCGGTGGGCTGCAAACTTCTTTACACTCTCCTCTGGGCGGATACAACTCAGACTACTCGAGTTTAAGCCACTCTGCCTTCAGTACCAGCGCGTCCCCGCATCTCCTCACCACCGGGCAGCACCTCATGGACGGATTCAAACCGGTTCTCTCGTCTTACCCGGACTCCAGTCCTTCTCCTCTGGGTGGAGCGGGTGGTTCCATGTTGACAGGGGGTCCGACGGCCTCTTTGGCGGGGTCCCCGCGGTCTTCCGCGCGGCGCTACTCGGGCAGAGCGACGTGCGACTGTCCGAACTGTCAAGAAGCTGAGCGGCTGGGTCCGGCCGGCGCAAGCCTCCGCAGAAAGGGGCTGCACAGCTGTCACATCCCTGGCTGTGGGAAAGTGTACGGCAAAACGTCTCACCTCAAGGCTCATTTGAGGTGGCACACCGGGGAAAGGCCGTTTGTGTGTAACTGGTTATTCTGTGGAAAGAGGTTCACGCGCTCCGACGAGCTCCAGCGACATTTACGCACGCACACTGGCGAGAAGCGCTTCGCTTGTCCCGTGTGCAACAAGCGCTTCATGCGGAGTGACCACCTCAGTAAACATGTCAAAACGCACAGTGCTGGGGGCTCGTCAGGGTCGGGGTCTGGGGCGAGTGGAGGGAAACGAGGGAGTGACACCGACAGCGAGCACAGTGTGCCCGGTAGCCCCTCATGCCATTCGCCTGACCTGTTGCAAGCCCCCGAGTCTGTCCCGACCACTGGAATGAACGGCCGTGCAAGCTCCCTCGATTAATCCCGCTCTAAATGCCAAGCTCGAATGGACTAGTAACGTATTTGACGCCTCAGAAAATGTACTGTTCGCTCGGAAACACTTTCTAAAAACTTTCAAgttaacaaaaaatctaaaatgttttgcAAGTTTCCGATTAATGCACATTCAAATATGAATAACCTACATGAAACAACATGAACCAAAGTTTCATTTCTTTTTAACTAGTTGAATGTACATTAATGAATGTTAATTAGgcctatattttttttgttaacagttaaagttattataaagtgtcacCTGAGAAGGAACCGTGTGGCCATTTCACGTGGATGTTGTAAAGTGATTCAGtttacaattaaaatgtaattacattg

Function

symbol description
sp8b Enables double-stranded DNA binding activity. Involved in embryonic limb morphogenesis. Acts upstream of or within embryonic pectoral fin morphogenesis and positive regulation of fibroblast growth factor receptor signaling pathway. Predicted to be located in nucleus. Is expressed in several structures, including apical ectodermal ridge pelvic fin bud; midbrain neural keel; nervous system; neural plate; and neural tube. Orthologous to human SP8 (Sp8 transcription factor).

GO:

id name namespace
GO:0045743 positive regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0030326 embryonic limb morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3654 Enables double-stranded DNA binding activity. Involved in embryonic limb morphogenesis. Acts upstream of or within embryonic pectoral fin morphogenesis and positive regulation of fibroblast growth factor receptor signaling pathway. Predicted to be located in nucleus. Is expressed in several structures, including apical ectodermal ridge pelvic fin bud; midbrain neural keel; nervous system; neural plate; and neural tube. Orthologous to human SP8 (Sp8 transcription factor).

Ensembl:

ensembl_id ENSDARG00000056666

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019632 False 2045 mRNA 0.50 2 19536614 19538772
TCONS_00019633 False 1765 mRNA 0.52 2 19536639 19538772
TCONS_00019634 False 875 mRNA 0.53 2 19536761 19537851
TCONS_00019635 True 1704 mRNA 0.52 1 19537073 19538776

Neighbor

gene id symbol gene type direction distance location
XLOC_009833 NA coding upstream 22623 19508738 ~ 19513991 (+)
XLOC_009831 NA coding upstream 124193 19375634 ~ 19412421 (+)
XLOC_009832 NA coding upstream 155322 19380866 ~ 19381292 (+)
XLOC_009830 rapgef5b coding upstream 384814 19029297 ~ 19151800 (+)
XLOC_009829 si:ch211-254p10.2 coding upstream 513498 19013018 ~ 19023116 (+)
XLOC_009835 macc1 coding downstream 98608 19637384 ~ 19677375 (+)
XLOC_009836 tmem196b coding downstream 138708 19677484 ~ 19681282 (+)
XLOC_009837 BX005389.4 coding downstream 147937 19686713 ~ 19715210 (+)
XLOC_009838 BX005389.1 coding downstream 165648 19704424 ~ 19704538 (+)
XLOC_009839 twist1b coding downstream 193767 19732543 ~ 19734149 (+)
XLOC_009826 NA non-coding upstream 1024415 18502566 ~ 18512199 (+)
XLOC_009821 NA non-coding upstream 1866157 17669300 ~ 17670457 (+)
XLOC_009840 CU855688.1 non-coding downstream 266245 19805021 ~ 19809117 (+)
XLOC_009847 NA non-coding downstream 991349 20530125 ~ 20531772 (+)
XLOC_009848 NA non-coding downstream 1146164 20684940 ~ 20695517 (+)

Expression


Co-expression Network