XLOC_009837 (BX005389.4)


Basic Information

Item Value
gene id XLOC_009837
gene name BX005389.4
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 19686713 ~ 19715210 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019641
TCAAAATGGTATATGAATTTAACCTGCACACCTTTTcatgtgtatgtttgtttagCAGGTCATGTGTTTCAACCACTTTCACAAAAACAAAGTGTGGAATACAAGAAGATGCAGCTGAAGCCTAACCTGTACAGAACCACCATCAAGCCCCACAGAAAAACACTTCACACCAGTTTAGAGCAGCCTTTACCTCATGTCCTAGCTCACACAAAATATGGTGCATTTGCATCTACAGGAAGAGGAGAACATCCATCCAGGAGAATTCAGGAGAGTAGACAAGGAGAACTATCCTTCTGTAATTCCAGGCGGTGAGTAATTGAGATCTCTCCCTCTCTTCCCCCAGCTGCAGAGTTTAGGAGTATAGGTGGGAGGACGTTGCGGCTAAGCTTCCCTCGAGTACAGGCTGCAGAGCCAGCGGGAGCATCCGTCCCCTTCCTCTGTTGTTTTTGGCACAAAATACCATCCCCTCCCCTGCTCACGCTCCCTCAGCCTACAACCCCCAACCTCTGCCTGTTACCCCAACGTCCCATATTCATCCCCGCACACAGCTGTAGCACTCTTAGTGACCCTGACTGTTATCGCACACACCAACAAACACTCAAGTTTAGACAGATAGTCGAGAAGAGTCCTAAAAATAAAGGTTTCGAAGGAGG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117558

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019641 True 653 lncRNA 0.47 3 19686713 19715210

Neighbor

gene id symbol gene type direction distance location
XLOC_009836 tmem196b coding upstream 5431 19677484 ~ 19681282 (+)
XLOC_009835 macc1 coding upstream 9338 19637384 ~ 19677375 (+)
XLOC_009834 sp8b coding upstream 147937 19536614 ~ 19538776 (+)
XLOC_009833 NA coding upstream 172722 19508738 ~ 19513991 (+)
XLOC_009831 NA coding upstream 274292 19375634 ~ 19412421 (+)
XLOC_009839 twist1b coding downstream 17333 19732543 ~ 19734149 (+)
XLOC_009840 CU855688.1 coding downstream 89811 19805021 ~ 19809117 (+)
XLOC_009841 ankrd28b coding downstream 340668 20055878 ~ 20154859 (+)
XLOC_009842 c16h2orf66 coding downstream 446595 20161805 ~ 20164454 (+)
XLOC_009843 hacl1 coding downstream 452601 20167811 ~ 20194385 (+)
XLOC_009832 NA non-coding upstream 305421 19380866 ~ 19381292 (+)
XLOC_009826 NA non-coding upstream 1174514 18502566 ~ 18512199 (+)
XLOC_009821 NA non-coding upstream 2016256 17669300 ~ 17670457 (+)
XLOC_009847 NA non-coding downstream 814915 20530125 ~ 20531772 (+)
XLOC_009848 NA non-coding downstream 969730 20684940 ~ 20695517 (+)
XLOC_009854 mir196d non-coding downstream 1198203 20913413 ~ 20913484 (+)
XLOC_009859 NA non-coding downstream 1425838 21141048 ~ 21142516 (+)

Expression


Co-expression Network