G228274


Basic Information

Item Value
gene id G228274
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 5261031 ~ 5261370 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU259034
ACGACGTGAGTCCAAGATCTCTTTGACCAAGTAAGCAGGTAATCCATCAATCTCCAGTGGAGGAGGGGGTTCAGGATCTGTGGTTCTGGGGTTTAGCTTCCTGCAGGGTAGTTGCAACTTCAGGTCCTTGGTGGATAGCCAGACTCTCTGTCCAGGCTGATAGTAGGGGTGGGGACGCCTCCGTCGATCAGCTTGGATCCGTTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU259034 True 205 lncRNA 0.54 2 5261031 5261370

Neighbor

gene id symbol gene type direction distance location
CI01000053_05253537_05256485 PLA2G1B coding upstream 4033 5253493 ~ 5256998 (+)
CI01000053_05235005_05242054 PRKAB1B, PRKAB1 coding upstream 18694 5233707 ~ 5242337 (+)
CI01000053_05214150_05219071 NA coding upstream 40701 5214150 ~ 5220330 (+)
CI01000053_05187818_05191994 NA coding upstream 68797 5187693 ~ 5192234 (+)
CI01000053_04887190_04967327 GFRA2A coding upstream 293704 4887190 ~ 4967327 (+)
CI01000053_05267143_05269915 NA coding downstream 5729 5267099 ~ 5270434 (+)
CI01000053_05296599_05301528 PLA2G1B coding downstream 35185 5296555 ~ 5301735 (+)
CI01000053_05314523_05315601 NA coding downstream 53153 5314523 ~ 5316590 (+)
CI01000053_05320241_05329853 HPS4 coding downstream 58871 5320241 ~ 5329864 (+)
CI01000053_05332254_05334016 NA coding downstream 70884 5332254 ~ 5334320 (+)
G228263 NA non-coding upstream 62463 5198356 ~ 5198568 (+)
G228243 NA non-coding upstream 104250 5156422 ~ 5156781 (+)
G227979 NA non-coding upstream 134624 5125961 ~ 5126407 (+)
G227974 NA non-coding upstream 146228 5114577 ~ 5114803 (+)
G227973 NA non-coding upstream 147937 5112853 ~ 5113094 (+)
G228311 NA non-coding downstream 150589 5411959 ~ 5412340 (+)
G228309 NA non-coding downstream 151199 5412569 ~ 5413283 (+)
G228317 NA non-coding downstream 168987 5430357 ~ 5430563 (+)
CI01000053_05435608_05443587 GGT5A non-coding downstream 183104 5435479 ~ 5445226 (+)
CI01000053_05471449_05512831 LRRC75B non-coding downstream 247874 5471449 ~ 5513074 (+)
G227317 NA other upstream 845438 4414951 ~ 4415593 (+)
G226399 NA other upstream 1563502 3620798 ~ 3697529 (+)
G226347 NA other upstream 1986120 3272374 ~ 3274911 (+)
G226292 NA other upstream 2214248 3036602 ~ 3046783 (+)
CI01000053_02594164_02594541 DYNLL6, DYNLL1, DYNLL2A, DYNLL2, BRAFLDRAFT_114344, DYL1, DYNLL1.S, BRAFLDRAFT_130244, DYNLL1.L other upstream 2665564 2592558 ~ 2595467 (+)
G228257 NA other downstream 114183 5375553 ~ 5378449 (+)
CI01000053_06725452_06758944 NA other downstream 1461829 6725452 ~ 6758944 (+)

Expression


Co-expression Network