G228257


Basic Information

Item Value
gene id G228257
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 5375553 ~ 5378449 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU259017
ATGAGCTCTTCATGAAGGAGTGCACAATGAAAGGCCTCCATGTGGTCTTTGGCTATTGTCCAAGAATATGCGTATGTGCAGGACAAACTGAACGCAACTGTACGGGTTTTCAGATGACAAAACAATGAAAAACTCAACAACCATGCAGTAACGTAACCTAAAGAAATAAAGTTCAGAGAGCACAAAATGGTAAAGCACATGAGGATGTATTCAAATTTAAGGCAACAAGGAATCAAAAGTACACAATGCATAACAAAAAGGAAAAAAAAAACAATCACACAAACAAACAAACAAACAAAAAATGCTTTTAAAACAACACCAGGCAGTGCAATATTTCACACTAGTAAAAGATTCATCATAAAAAATAAAAAATTCAAAAGATCCTGAGGAAATAAAAATCAACTACTTACTTCCTGGAAAATAAAGTCTTTCAATATTTTTAATATTCAACCCATTTCCTTTTGCTTAAATTATACAACATAAACCCCAACTGTAAATTAACTAACCTCAATACGATCCAAGCTCTTTCTGACGATCAGTCAGTGTGTCTATGTGGTTGCAAATCACTGTCATTATCTAGACCACATCCACAACCAAACTATTTAAGGCCATTCCTCCACTAGGCCAGATATTTAAAAACCCAGACACCCCAATAGTAATTACATGAAAAAAAAAAAAAAACTATATTCTGAAGAGAAAAAGAACCGTATGGCACAACAAACCAAGTACCTTATATACACATGCACCGTGTAAAAGTTTTTAAGAAAAGAAAACGACTTTGGCGACGATAATCAACTTTGTGCAACTCCGATAAATGAAAAAGTTGCCTCAATGTTTTTATGATTGTTTCCTATTTTTTTTAAAAAACAACAACAACAACCCAAGGCAAAACCTGCCCTCTCATCCAACTCCTTCTGAGAAGGTGAAGGCCAAGATAAGTTATAAGAAGTTCACACAAGAGACGGGGTCAAACTGACAGGTGGCGCTCGCACGTCAGACAGCACAGTGGCATGAGCGCTCGATCGTGGTCTGATGTTTCAGCAGTGTGAGAGTTGGTCTCTTGATAGCACACTAAATCACATTTTAAGGCAAGCTTGCTTGAGCGGAACAGAAAGTAACATTATGAGAAAACAAATTAAGGGAAAAAGAAACAAGATGCAGCCAAGGAAAAAAAAAAGAGACTAAAATAGCAAGACGTGAAAAAAGTATACCAGAACATGCTGAGAAAAAGAACGATGGATGAGATGGAATGCAAATGTTCACTCAACATAAGCTAAATGACAGCACTGAACTTTGCCATCTTGAGTACAAAATTCCAGCTTCTGCATCCATACTTCACAGTGTATGGCAGGCATGTATCTGTTGAATTCTTCCACCACAAGCATTCTGGCGGTTTTGTGTAACGCTAATCCAAGAATCTTTGGCGGTATTGTTAAAAACGGCCTGTATGGATGAAACCGTGACAAAAAGCATCCTGACTGAGCATCTATCTTTCTTCGACGCACCGTGTAATAGGTGACCGAGCCCTTGCAATGTTAATTAAGATGCCATTAATTAAATTAACCAATAAAATGCTATCCCACACACATCATGTACCAATGAGAGTGGAGAAATTAAGGGTATTTGACACTTTAGTCTAATACAATCTTAAAGTTATCAAAGGCCAGTGTATTAAAGACCCTCTTTGTTATGAACTCAAGTTCCCACCTAGAAAGGGAAACAATTACACTATCTTTCAATACAAAATCATAATGTTTTTTATTTAATACAGAACGCATGCAGATATTCAGAGACCAAAATGTCCCCGTAAATGGGAAAAAATAATCATTTAGATCTCCTTTGTGCAGCTGGAGATTCAAATACGTGTTGGCGTTGTCTGAAAATATGATATTGAGGAATGGGATATATATGCTTTTTAAATCATACAAACAATGACAGAAGCTGCAGGAAATGAATGAGAGAAGCTTGTATGAGTGTGAGGGAAATAAAAAGTGAGGTAAGTAGAAACCAAGGTCTCAAATCACTTAATAAAACAAAAACGCTTTATGATTCGCCACTGAGGTTTAGATGCATTAACTAAATGAAGTGTCAAAAAGGGTTCTGAAAATTCTTGTACCATTTCTGCCTCCCACCAGAGACCACCCCCACCAAAAAAAAAAAAAAAAATTCAGCAGATCAACGCCACAGCTGATTAGAAGAAGCTCCTAGCCAATAACTTTCCATTAGTTGGGACACGTGATCTAGGAGTGTCCTCAACTTTTCCTCAGTGTCTCCTGCTAGACCAGACAAACCAGGTTTGTAAAGTGGTTAGTCCTGCCGCAGATGTGTGTGTGCATTTAATCGGTACCTCTCGGATCTCCTCGAACTAAAATTGGTATTAAGTGTGTACAAAACACAAGCACAAACACACACAAAAATGAACTTGCATTCAAAATCCACGTATTCTCCGGGTCACCTCTTTCAAAAACCAGCAATATCTGTCCCTCGCCTGTTTTTTGCTTTCTCTATCTGTTGTGATGTCAGTCTATATTTCTGCCTGTCCCCACGGCTGTGCGTCCCTCGTTGCGCCCCTCCCCCCACCCCTTCACAGCCTGATGTCCGTCCTTTCTCCTCTCTCTCCCTCGCGTTCACTTGTTCCCCTCAAAGGCGGCAGAGGCAGAAGAGGGTTGGGATGAAGACCCCGAATGCCACGAGTATAGGAAACATCAGGCTGCTGTTGTCAGTGGCGTATGGGTTGGGGGTGCGTGGCCCGGACCGAACCGGATTCTTGGGAGAGGTGGAGGCGCTCTTCTTTTCGCCTTCTGCACCCTCCCCCTCCTCTTCTTCCTCCTCCTCTTCCTCTCTCTTTTCCAGTCCAGGATGTGGCTGCAGTTTTGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU259017 True 2877 TUCP 0.40 2 5375553 5378449

Neighbor

gene id symbol gene type direction distance location
CI01000053_05362044_05364177 PBLD2, PBLD coding upstream 9856 5360922 ~ 5365697 (+)
CI01000053_05338500_05348218 HNF1A coding upstream 27335 5338500 ~ 5348218 (+)
CI01000053_05332254_05334016 NA coding upstream 41233 5332254 ~ 5334320 (+)
CI01000053_05320241_05329853 HPS4 coding upstream 45689 5320241 ~ 5329864 (+)
CI01000053_05314523_05315601 NA coding upstream 58963 5314523 ~ 5316590 (+)
CI01000053_05435608_05443587 GGT5A coding downstream 57030 5435479 ~ 5445226 (+)
CI01000053_05471449_05512831 LRRC75B coding downstream 93000 5471449 ~ 5513074 (+)
CI01000053_05526931_05550454 NA coding downstream 148180 5526629 ~ 5550472 (+)
CI01000053_05563771_05573792 RNF34, RNF34A coding downstream 185322 5563771 ~ 5573965 (+)
CI01000053_05589379_05590208 NA coding downstream 210443 5588892 ~ 5591102 (+)
G228274 NA non-coding upstream 114183 5261031 ~ 5261370 (+)
G228263 NA non-coding upstream 176985 5198356 ~ 5198568 (+)
G228243 NA non-coding upstream 218772 5156422 ~ 5156781 (+)
G227979 NA non-coding upstream 249146 5125961 ~ 5126407 (+)
G227974 NA non-coding upstream 260750 5114577 ~ 5114803 (+)
G228311 NA non-coding downstream 33510 5411959 ~ 5412340 (+)
G228309 NA non-coding downstream 34120 5412569 ~ 5413283 (+)
G228317 NA non-coding downstream 51908 5430357 ~ 5430563 (+)
G227317 NA other upstream 959960 4414951 ~ 4415593 (+)
G226399 NA other upstream 1678024 3620798 ~ 3697529 (+)
G226347 NA other upstream 2100642 3272374 ~ 3274911 (+)
G226292 NA other upstream 2328770 3036602 ~ 3046783 (+)
CI01000053_02594164_02594541 DYNLL6, DYNLL1, DYNLL2A, DYNLL2, BRAFLDRAFT_114344, DYL1, DYNLL1.S, BRAFLDRAFT_130244, DYNLL1.L other upstream 2780086 2592558 ~ 2595467 (+)
CI01000053_06725452_06758944 NA other downstream 1344750 6725452 ~ 6758944 (+)

Expression


Co-expression Network