XLOC_009840 (CU855688.1)


Basic Information

Item Value
gene id XLOC_009840
gene name CU855688.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 19805021 ~ 19809117 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019645
GAGAAAACAACGATACGAGGGTGCAATTCAGAGACCTGCTAGTTTTAGCTGGAGCAGAGAACAtacttttttttcaacacgttctcactcccaactcgtcatatactgacgcttggtcaggaaccctcggcgtaagttattgacgcacagggtacccctttagcgtcatatttagacgtgcagggattccctatagaatctgtgcctgagcctgaggcgtcatagggagacgctggaggctcgtataattaccaatagatgtcaacgaaatttttaaaacctgatttacgcctattatcttagttttcttattttaaaaataagtaatttttattttgttcacgaaaagcgtctgtaaactgggtcgaaactactgtatgaataaacttcggtccacgtgacatcccttcacggtgagtttaacgccgctctgctattggtcaaactgcatcagcggtgagttctcagatgagttcaactgtcaacattaaatattacgttaatgctgcataatgtatttttattggagattagttggtgtttataaatatgttatcatttactttatatttaatgagtgaaaatatattcggttgtccagtttagggtaactatctctaataaaactttgattcatttatattatttattatttttttactttaaaaaatattacatttcaagtactaagtttaaaaatgttttcggctgatctttttcattttaaattatttattgaagttggggtcattgtatgtggcgatctattttttacagtctatgctcgctatcccaaggttcattgcgatcccaaggttcactgcggttttccacaagCCTGTTTCTGCCTATCACCATGAGTGATTCCTTTATACTCAGATTTATTATCAAGATCTCAATTATTAGCTCAAGTCTTGATGACAACTTGATGATCTGCAGGAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGCTCATAGGAACTCCAATCTTCCCAACTGTGAGAGAGCCTTGCTCCAGTGA
>TCONS_00021918
ggttcactgcggttttccacaaggtaagtaaaaaataaacaaataaagacgatttgttgataaagcatgtactgtaaactagcgacgttatctaattacatcaagttcatttattaaaaacatatttttttcacatataacgttggtcaggcattagaacaatatatacattttaagataaggaacagtgtaaccagattgttgtttttcACAATAGAATTagtgcaaaatctatatataatatgcaatatgcaactctaataatacaaatgtattcgtaattgtttcaatattaaagaacatcaagtgtttccaaaggtttattgtaaaaacaattattttccatgcctttaaaggaaaaaaggcagaaattttgcctgtctgagcacattttattcattgtacaacacaaaactaaacaaaaaaacagattaatctgccacacacacacacacacacacacatatatatacaggtgtaaattataaggtgttcactgttcagatatgaatatttttttctttgctcttttcaggttctttagatttctttaaaaatccaattttgttttctaataagcaaaaagtaaaatcactttacccatgtttatatgttaaattgcacttgtctctatctctgttaacacatttgtgtttgtttgattaaTTCTTGTGTCTTTCAGCCTGTTTCTGCCTATCACCATGAGTGATTCCTTTATACTCAGATTTATTATCAAGATCTCAATTATTAGCTCAAGTCTTGATGACAACTTGATGATCTGCAGGAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGTTAGTGAAGTTTTTCATTCTCTGCATATTAAATATCTACATTGTTTAGGCATATATGATTGTAtgagataaaatgcatttattcgttcactactattgtaataacagaaagagaagcattagttttactattactattgtttatgacaaacattaaaaaactacagCATAAGCTCACAAAATATTGTGGCCTAACTGTTTAAACTATTTGTTCTGGGTGTTGATAGTggccaaccattttttttctttttcagaaagtattttgttttgtctgattttatgaCACCTTATAGGCCATCAACTGTCAACAATGGGGTTTAGGAAATTAGAACTGCTTATGCTGCTTGTCTACTAGTCTTAGGATAAGttagaaatgttataaatgtacattttttgttgtgtttatctGGTACAGCTCATAGGAACTCCAATCTTCCCAACTGTGAGAGAGCCTTGCTCCAGTGACTGTCAGTGTGTACTTCATTGCTTCCATTAGTCCCTGTATCTGTAGACCTAGGTGACAGTGGGCTAGAgtcaaattttgtttttatttaaactaaggcaTACTGAGGGCCTTTTTATCTCAGATTTGGTCATGCAAGTATTAatatatcctaaaatatttttatattctttccatTGGTGGAAAAGATGTTGGTATAGTTATTTTTAATGGACTGCTAAGATCTCAGCAGACATTTTCTTAAATGGGAGTCTGTGCAATACAAGGTGGATAGTATTTGCAAGGAAGAACCCTTTATCTGTCCTGCTTCCACACCAGATATACTGCCAATTTAAGTAGATGTGAACCATAAGCATAACCATTTCAAGAATGCACAaggtactttaaactgtatgtgttgtaactaaattaacaagaaaacagcTCTGTGATGTTCACCTAGTAAAATTAgattagaagatataaactgTTATGCACTTGTTCTGTACGGTTTCATTCCTTTTTCAAACAATGGCATTTTTGAAGGTTTATTTACAGCTAAGGATTAAGGATTGACAGGAAGATTTGTGGACTACATCAACTAATGACACTACCTCCAAAGAGTTGAAAAAAGCTGTCCAAAGTTTCAGCACCATCTTTAAGCCCATGATTTTAGTGTGTTTCATGCCTAAGCACATGAGTTTATATCTGAGTTTATATCATAGATGAACTATGTGATTATCTTAAACTGATCTACAGGTAAATGCAAAAACTTATtggtttacttatttgtttgtttgtttgtttgtttgtttttgtatatgtTAACCAGGTGAAATGGAGTGAGGCATACAAGGATATGTGTGGTTTTACTCTTGGGAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGATATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTATTGATATCAGAAGGTAACAATATCCAGTAGAATTTGTTTTAGTTGTTCTATAACCTATTTGAATAGTATTGTGATTTTTGATTGCTTATCACTGTAGACCGCAGCAGCTCTGGCAAAGCAAGTTGCAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGAGGGTGAggaaattcttattaatattacatgaagTCATGAAAAATTGTAggtgttactattattgtcattttttcagtagcagaagcAAAGACAACAAACAACAGAAGTGATATGGATGTCTTCGTCATATGGCATGGTATGTACACTAGACTTCTGTCAGTGTTGATTCTTTAAAAGTTGACGTATAATCCTTGTTATACAactttctttttataaatatatttcagactcTGCTGATCCAGCAACAATAAGGAGGGTGTTCAACATCATCCTGCTAGTCAGGATTCTTCAGGAGAAGCAGTGGATTCTTGTGGCAGAGATGGCCAACCACAATAAATACCTTTCAACTCATCCTGATTCCTTCAAAGAACTTTCCTGCTTGTTTGCTACTGAAAAGTACtggtatgtatttgtattatttggcacagacataagcataaggttacccagtccaaagaatataatatatttttatgttgttgtgttcttcTTTTAAGATTCGACATGTGGCCTAAACAAAGAGGGGTTAAAAGGTCTATGGATCATCATTCTCAgaaagcaacaaaataactgataaataaacaacaata
>TCONS_00021706
CTCATAGGAACTCCAATCTTCCCAACTGTGAGAGAGCCTTGCTCCAGTGACTGTGAAATGGAGTGAGGCATACAAGGATATGTGTGGTTTTACTCTTGGGAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGATATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTATTGATATCAGAAGGTAACAATATCCAGTAGAATTTGTTTTAGTTGTTCTATAACCTATTTGAATAGTATTGTGATTTTTGATTGCTTATCACTGTAGACCGCAGCAGCTCTGGCAAAGCAAGTTGCAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGAGGtagcagaagcAAAGACAACAAACAACAGAAGTGATATGGATGTCTTCGTCATATGGCATGactcTGCTGATCCAGCAACAATAAGGAGGGTGTTCAACATCATCCTGCTAGTCAGGATTCTTCAGGAGAAGCAGTGGATTCTTGTGGCAGAGATGGCCAACCACAATAAATACCTTTCAACTCATCCTGATTCCTTCAAAGAACTTTCCTGCTTGTTTGCTACTGAAAAGTACtggtatgtatttgtattatttggcacagacataagcataaggttacccagtccaaagaatataatatatttttatgttgttgtgttcttcTTTTAAGATTCGACATGTGGCCTAAACAAAGAGGGGTTAAAAGGTCTATGGATCATCATTCTCAgaaagcaacaaaataactgataaataaacaacaatacgatggtgcaatctagagacctgcaaggtacctgcaagttttggctggagcagagaacatagattttttaaaataaagctccagctgatgagtatgacattgactgtggattttcttttactgtaatccagaagaggatgaccttaaccctgaatctaaagcatg
>TCONS_00021707
GTGAAATGGAGTGAGGCATACAAGGATATGTGTGGTTTTACTCTTGGGAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGATATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTATTGATATCAGAAGGTAACAATATCCAGTAGAATTTGTTTTAGTTGTTCTATAACCTATTTGAATAGTATTGTGATTTTTGATTGCTTATCACTGTAGACCGCAGCAGCTCTGGCAAAGCAAGTTGCAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGAGGtagcagaagcAAAGACAACAAACAACAGAAGTGATATGGATGTCTTCGTCATATGGCATGactcTGCTGATCCAGCAACAATAAGGAGGGTGTTCAACATCATCCTGCTAGTCAGGATTCTTCAGGAGAAGCAGTGGATTCTTGTGGCAGAGATGGCCAACCACAATAAATACCTTTCAACTCATCCTGATTCCTTCAAAGAACTTTCCTGCTTGTTTGCTACTGAAAAATTCGACATGTGGCCTAAACAAAGAGGGGTTAAAAGGTCTATGGATCATCATTCTCAgaaagcaacaaaataactgataaataaacaacaatacgatggtgcaatctagagacctgcaaggtacctgcaagttttggctggagcagagaacatagattttttaaaataaagctccagctgatgagtatgacattgactgtggattttcttttactgtaatccagaagaggatgaccttaaccctgaatctaaagcatg
>TCONS_00019646
GTGAAATGGAGTGAGGCATACAAGGATATGTGTGGTTTTACTCTTGGGAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGATATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTATTGATATCAGAAGGTAACAATATCCAGTAGAATTTGTTTTAGTTGTTCTATAACCTATTTGAATAGTATTGTGATTTTTGATTGCTTATCACTGTAGACCGCAGCAGCTCTGGCAAAGCAAGTTGCAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGAGGtagcagaagcAAAGACAACAAACAACAGAAGTGATATGGATGTCTTCGTCATATGGCATGactcTGCTGATCCAGCAACAATAAGGAGGGTGTTCAACATCATCCTGCTAGTCAGGATTCTTCAGGAGAAGCAGTGGATTCTTGTGGCAGAGATGGCCAACCACAATAAATACCTTTCAACTCATCCTGATTCCTTCAAAGAACTTTCCTGCTTGTTTGCTACTGAAAAGTACtgATTCGACATGTGGCCTAAACAAAGAGGGGTTAAAAGGTCTATGGATCATCATTCTCAgaaagcaacaaaataactgataaataaacaacaatacgatggtgcaatctagagacctgcaaggtacctgcaagttttggctggagcagagaacatagattttttaaaataaagctccagctgatgagtatgacattgactgtggattttcttttactgtaatccagaagaggatgaccttaaccctgaatctaaagcatgtaataaaatctgtaaaaataaaattttcatcatctataaccaaa

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0030163 protein catabolic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0043632 modification-dependent macromolecule catabolic process biological_process
GO:0006412 translation biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0010498 proteasomal protein catabolic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0019941 modification-dependent protein catabolic process biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022624 proteasome accessory complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005838 proteasome regulatory particle cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005840 ribosome cellular_component
GO:0101031 chaperone complex cellular_component
GO:0008540 proteasome regulatory particle, base subcomplex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0070003 threonine-type peptidase activity molecular_function
GO:0019843 rRNA binding molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117491 ENSDARG00000117789

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019645 False 1039 lncRNA 0.38 3 19805021 19807133
TCONS_00021918 False 3074 lncRNA 0.34 1 19805835 19808908
TCONS_00021706 False 1018 lncRNA 0.40 4 19807084 19809073
TCONS_00021707 False 865 lncRNA 0.40 4 19807943 19809073
TCONS_00019646 True 915 lncRNA 0.39 4 19807943 19809117

Neighbor

gene id symbol gene type direction distance location
XLOC_009839 twist1b coding upstream 70872 19732543 ~ 19734149 (+)
XLOC_009837 BX005389.4 coding upstream 89811 19686713 ~ 19715210 (+)
XLOC_009838 BX005389.1 coding upstream 100483 19704424 ~ 19704538 (+)
XLOC_009836 tmem196b coding upstream 123739 19677484 ~ 19681282 (+)
XLOC_009835 macc1 coding upstream 127646 19637384 ~ 19677375 (+)
XLOC_009841 ankrd28b coding downstream 246761 20055878 ~ 20154859 (+)
XLOC_009842 c16h2orf66 coding downstream 352688 20161805 ~ 20164454 (+)
XLOC_009843 hacl1 coding downstream 358694 20167811 ~ 20194385 (+)
XLOC_009844 colq coding downstream 388947 20198064 ~ 20238985 (+)
XLOC_009845 fkbp14 coding downstream 485859 20294976 ~ 20305104 (+)
XLOC_009833 NA non-coding upstream 291030 19508738 ~ 19513991 (+)
XLOC_009831 NA non-coding upstream 392600 19375634 ~ 19412421 (+)
XLOC_009832 NA non-coding upstream 423729 19380866 ~ 19381292 (+)
XLOC_009847 NA non-coding downstream 721008 20530125 ~ 20531772 (+)
XLOC_009848 NA non-coding downstream 875823 20684940 ~ 20695517 (+)
XLOC_009854 mir196d non-coding downstream 1104296 20913413 ~ 20913484 (+)
XLOC_009859 NA non-coding downstream 1331931 21141048 ~ 21142516 (+)
XLOC_009862 NA non-coding downstream 1825270 21634387 ~ 21634836 (+)

Expression


Co-expression Network