G228586


Basic Information

Item Value
gene id G228586
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 5546145 ~ 5546379 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU259408
CTTATAAATCATACATAATTAGTTTTTTTGAGAAAGTAAAAATGTGCAGTTTTCTGTGATGGGTAGGTTTAGGTGTAGGGGTAGTGTAGGGCGATAGAAAATATGGTTTGTACAGTATAAAAACCATTACGCCTATGGAATGTCCCAACAATTCACAAAAACAAACGTGTGTGTGTGTGTTTGAAAAGACATGTACTGCATGTACTGTCATGTGTTAATTGTAACAGGTAAGAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU259408 True 235 lncRNA 0.35 1 5546145 5546379

Neighbor

gene id symbol gene type direction distance location
CI01000053_05521820_05524159 GPX8 coding downstream 21986 5521615 ~ 5524159 (-)
CI01000053_05452721_05459354 GGT1A, GGT1B, GGT1 coding downstream 86791 5452264 ~ 5459354 (-)
CI01000053_05416830_05423957 ASPHD2 coding downstream 121448 5415744 ~ 5424697 (-)
CI01000053_05390157_05393405 NA coding downstream 152740 5390023 ~ 5393405 (-)
CI01000053_05378213_05386176 NA coding downstream 159532 5377310 ~ 5386613 (-)
CI01000053_05552919_05561938 ANAPC5 coding upstream 5856 5552169 ~ 5562961 (-)
CI01000053_05577140_05583728 KDM2B, KDM2BA coding upstream 30667 5577046 ~ 5584765 (-)
CI01000053_05621226_05622308 APJA, APLNRA, APLNR coding upstream 74030 5620409 ~ 5622498 (-)
CI01000053_05675892_05686424 NA coding upstream 128600 5674979 ~ 5686424 (-)
CI01000053_05690377_05690558 NA coding upstream 143998 5690377 ~ 5690777 (-)
G228585 NA non-coding downstream 3489 5542425 ~ 5542656 (-)
G228584 NA non-coding downstream 8321 5537605 ~ 5537824 (-)
G228583 NA non-coding downstream 12623 5533210 ~ 5533522 (-)
G228576 NA non-coding downstream 27616 5518303 ~ 5518529 (-)
G228563 NA non-coding downstream 42912 5502955 ~ 5503233 (-)
G228589 NA non-coding upstream 56432 5602811 ~ 5603113 (-)
G228592 NA non-coding upstream 58370 5604749 ~ 5605034 (-)
G228593 NA non-coding upstream 58772 5605151 ~ 5605392 (-)
G228595 NA non-coding upstream 62918 5609297 ~ 5609705 (-)
G227604 NA other downstream 1458405 4087237 ~ 4087740 (-)
CI01000053_03551506_03551965 NA other downstream 1993174 3550333 ~ 3552847 (-)
G226963 NA other downstream 2548877 2996717 ~ 2997268 (-)
G226826 NA other downstream 2979073 2565892 ~ 2567072 (-)
CI01000053_02225226_02226481 YPELD, YPEL2B, YPEL1, YPELC, YPEL2 other downstream 3308749 2225210 ~ 2226481 (-)
G228651 NA other upstream 238104 5784483 ~ 5787690 (-)
G228750 NA other upstream 385213 5931592 ~ 5932241 (-)

Expression


Co-expression Network