XLOC_009844 (colq)


Basic Information

Item Value
gene id XLOC_009844
gene name colq
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 20198064 ~ 20238985 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019652
tatttgctaatgcttcataAATAGCTATTATAAATTGTTGCTGCCTCAtgagatgctttttttttctcaaagttatatcttgtaaaagtgttttaaaatgaaaatgtgattCCTCAGTAAAactcctctctgtctctctcttcgTTCTGCACTCTGTCTGATTGGAGGCATTCACAGACTGCATCTCCCATCAGGCCTTTAAACGACCCTCTTCATAATTGCCCTATCATTAATTCTCCAGGAAAGTAAAGGCACCAATAAATTGTGTTCAGTGGTGGTCGATACGTCCTGCAGAAAACACTAAGAGGGAGGGCGAGATAAACGAGGGGTGTTCTGGAAAGCATCTGTGATATTCCACTACAGCGCACTAGGCTAATTCTGTCACTGAATGCATGCGCACCAATATTTATTGCACTGATGAATAAACATTAATGTGTAGCTTCTCTGAAGCTAATTGGATGCCTTAAATGGATAGCAGTagtcacaaaaaaaacacagtcacTTCAATGTCATTTCTATTCGCACTGTTTTGTTTTCTCTGTCCATTTTGGGAAGGGGAAACAAAGGCAGTGCTGGCAGTAGTAACAGGCTAATATTGGCTACAGAGGGCAGCTGACCGACTGCCTCCTGTATATTTAGCTCAGGGCCAATACGCGAGGAGAGGTGTAACAGACATTGGCTGGCATTCGCTTCTAAAGGCGTgggtctagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtttgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagaggagggctGGACTGCTTCATATCAGTATTGGGTGCTATTGGAGGTAGAGCGCACGCCGGCAGCATGATTCTCTTCACATTTGGACTATGTTTTCAACTTCTCTGCTATGTGTTGTCTTTCTCATACGTGGATGACTTATTCCCTTTTCCAACAGATCATCAGTTGTTGGAAACCAGGAAGAAATTCAACCCCTGCTGTTTACTGAGTCCACCTCCACCCCCTCTCTTTCCCCCACCCCCTTCACTGTGGAGGCAGGGGTCTCTGACAAAGACTGAGACTAGTGTTACAGCAAATGAAGGATTCACAGAAGAGAAGCACAATCCTACAACCCACACATGTTCTTCAGGGCCTCCTGGGCCCCCAGGACCAGCAGGACCTCCTGGCCCACAGGGTCCTGCTGGACTGCCAGGACCAAAGGGACCAAAGGGAGATAAGGGTGAAATTGGAAGACCTGGACAAAAGGGGCGCACTGGTCCTCCTGGTCTTCCAGGACGTCAGGGACCAAGCGGATGGCAAGGACCAACTGGGCCTAAAGGGGAGAAAGGTGACCCGGGATTGATGGGATTGCCAGGGGCTAGAGGACCAATGGGACCCAAGGGCTTACATGGATTTAAAGGGGAAAAAgGTTCACAAGGTTTCAGAGGTGAAATTGGCTTAAAAGGTGACCGAGGATCAATGGGTCTACCTGGAATGCTGGGAcaaaagGGTGAAATGGGCCCTAAAGGAGAACCTGGAAGCTCGGGAAACAGGGGACCCACTGGCCGCCCAGGAAAAAGAGGAAAGCAGGGGTCAAAAGGTGACACTGGTGCAATTGGACCCATGGGACCTGGAGGCCCTCCTGGGGCCCCTGGTCATCCTGGCCCTCCTGGAGTGTCCGCCTCagGACTGTATATGGTCGGACAAAAAGGAGACAAAGGACAACAAGGTAGTCCGGGTCGCTGTAGCTGTAATGTCCCAGCCAACCCCTCTTTGGACCACCTGCACTGGAGTATCTATCCCAGAGTGCCTGCAATATTTGTGGTGAATAATGAACAGGAGCTGAACCGTGTCCAGACTGAAAATGCGTTGGCCTTTCGTAAAGATCAGAGGTCACTTTACTTTAAAGACACTGGCGGCTGGATGCCAATTCAGTTAACACCGTTCCAGTCGATGGAGAGCGATCCTGATCCGGAGGGATTCTGCGGAGACAGCATTGTGCAAGTTGAAAACGGAGAGGAGTGTGATGACGGAAATAAGGTGGTCACAGATGGCTGTGTCAAATGCAAACTTGCATATTGTGGGGATGGATATCGCTACGAAGAGGCTGAAGAGTGTGATGGAAAGGACTTTGGCTTTCACACATGCAGATCCTTTTTGCCTGGATCCTATGGGCACCTCAAGTGCACTGCTGACTGTTTCATAGACTCAACAAACTGCAAGTATTTCACATGAGGACACAAAAAGGCGATGTATCGTTTCAGCTGGCGAGATCCATAtaaacaacaacactgaaaacTTTGGATTCAGCAGAAAAAATCAGAGGCGAAAACATTGAGGGggatcattacacacacacacacattagctaAGAAGCCATGTACTGTAGCTCATTTGGGAAAGGAGCCACGGGTCGGCGTGGGCTCCTAGAAACTCTACCAGGATGCATTTCTCCATTCATTCAGCCTCTGTTGTCTGCCGCTCTGCACCGGCGAGACAATTTGGGCCAATGTGGTTGTAAACGGGAGAGGCGGGTGTCTCGTGGAGATGGTTGAAGGACTCCTCATTACCTCAAAGTACTGTGTACTGTTTCAGAGGGAAGACATTTTCTCCTGGTCCACCTTGGTGCTCTGTTTGTGGAATGTGATGTGTTACTATAATATTAAGCATGGGGCTGAGATTACTGAAGACGGCAGCAGAGATCATTACtgagaaaataaaacaatagcaGCTTTACATCTTGAAGCATAGTATAAGATTTTAGACTTAGACCAAACTGGTGATTGGCTCGGATGAAACCTAAAAGTGTATCTTCTCTTAAATATCAAAGATGTATGTTAGGGGTAGTACAGTTTTGGAAAACTGGGTCCAAAATTAGCTTATTGTCATACAGCTCCATCATTCATAAACTGAGGAATAAACTAGAGGGGGAAAAGCTGTTGGCTCTTAAAATCAAGCAAAATGATTTCAGTTGTTATTGAAACGTTTATTGCGAGTAGGGCTGCACAACTTTGGCAAAAttaaacattgcaatattttttttattctgcgatttatattgcgatatgaatggAATTCCACTACATGAGTTAAATAACTATTTGGAATAGTTAACCATTTTAGATTGGGATAATTCTGTAAATGTGGATTAAATATAAGAAATAGTCTACAAGCGTAGGTAAATTTGATAAAGAAAAACATACCTATAAAATAAATGGCGTTTGATTGTTATCCAATGAGTCGAACTGTATTTTGGTGTACAGTAACTggataatcaaatgtaaaaggataccgcatagtctttgttttataaataatttaattgttaataatttgttacaacaGTACAGTACAATTTCTTAggtctgaatgcttttaaaacccccACAAAGTCACAGGCCTCAAGAAACACTCacgaaatgatcaattataatctaGACTCAAGATTACGCATGctcgcgatgtgactattgcgaatgattgCATtgcgatgctgaaatgatatattgtgcagctctaattgtGAGCATTGAAACAAACATTTCTAGTAATTATGAAACAAAACGTCAGGAAATACTAGTAGTACTTTCtctatgaatatattttaaaatgttattttatttctgttatggTGAAGCTGAATCTTCAAAACCCCAACCGCCTCAGTGCCACGTGATCTTTCTGAAGTCATTCTAAAGTGATCATTTGTTGCTCCATCATGATCAAGCATTGGTAGCGGTTCTTATTATTGtcaaaagagatttttttttttcacattttatgtcATAAGTTTGACACAATATACTTTTTTTAGGAGATTTGTACAATAGaaagttcaaaataaaaacagttttatagatacagttaggtccataaatatttggacatcaacacaattctagcATTTTTGGCTCTGTACACTAACACAAGaggtttgaaatgaaacaaacaagatgtcctttaactgcagactgtcagctttaatttgggatatttacatccaaatcaaaACTTGTTAAGGGtgcaaaagtaattggacagaataataatcataaatcaaactttttattacttggttgcaaatcctttgctgtcaattacagcctgaagtctggaacacTTTGACATCATCAGATGCTGGGTTTATTCCTGCTGGTGCTCTACCAGGATTCTACTAAAATTGTCTTCAGTTCCTGTTTGTTCTTGGGcaattttcccttcagttttgtcttcagcaagtgaattGCTTGCTCAGTAGGATTCACATTAGGGGATTGCCTTTATCATGGCATAACATTGCActatttggttgcttttgcagtatgctttgagTCATTTTCCATTTGCACTGTGAAGCGCCATGcaatgagttctgaagcatttggcttaatatgagcaaaaaatattgcctgaaacacttcaaaattcatcctgctgcttttatcagcagtcacatcatcaataaatgtaAGAGAACCAGTTCtattgacagccatacatgcccacgccatgtcactactaccaccatgcttcactgcttaggatcatgagcagttccttccTTCTCCATACTTTTCTCATCCCATaactctggtacaagttgatctcGAACTAATCTGTCCCGAACTGTTAAGACTtctttaaaactctaatctggcctTGCTGTTTTTGAGGCCCAACattggtttacatcttgtggtgaaccatCTGTATTCAGTCTGGCGTAGTCTTCTCTTGACTACATGTTGactttgacacacatacaccaacctcttggagagtgttcttgatctggtcAATTGTTGTGAATggtgttttcttcaccagggaaagAATTCTATGGTtgtccaccacagttgttttccATGGTCTTCGAGTCTTTTGGTGTTTTTGAGCTCACTGGTGTGCTCTTTCTTTTTAAGAAGGgtccaaacagttgttttggtCATGGCTAATTTTTTTGCTATGTCTCTAAtgggtttgtttagttttttttcagcctaatgatggcttgcttgactgatagtgaaaactctttggatctcatcttgagagttgacagtaacagattccaaatgcaaatagcacacttgaaatgaactctggacctgtTATCcactcattgtaattgggataatgagggaataacacacatctctacatggaacagcttagaagccaattgtccaattagtTTTGGACCCTCAACAAGtgagaggcacatatgcaaactgttgtaattcctacagctttcacctgatttggatgtaaataccctcaaattaaagctaaaTTTCAATTCGAttgtgtatagagccaaaattgttagaattgtgtcgatgtccaaatatttatgggcCTAACTGTATAAaatcatatataatattttaaatatattcactatcagtttatttatttatttatttatagtgaaTTAAATATATCcttgattatttaaaaatgtatatattaattttatatacttCCGAATGATAACGTAAAATCTGTTTTCCATAAAAATGGAGCAGTGCAACTATTTTTAAACCtgataatttattcaattttttatcTAATCAGAAATGATTCTCGATTAGAAAACACATTAGAATGATTTTTGAAGAATCACACGAATTAGttatgtttgaaaacaaatatgCATAGAAAAAGTACCAAAACAGttgttttaaattcaacaaatattttacatCTGTTTTAATGTGATTTGATCAATTAAATGTAGTCTCAGTAAAAGCAGAAGAAGAATGAATTTGCTCGATAATGATGTTTTAGAGTAATACGTTGGCGAATCAGACTTCAACTTGCGTTCAATAAACATCATTACAAAATCGgttaacactttaaaatgacagtacatgaataatgatgtgttaatatgtaaactaaacatgacTTTATTATGACCTATTGATGAGTTAATGTATGCACCAATCAAAAACTATGCGCAAatctttaactacaacatgaatTCAAGTGTGAATAACAGCCACTGTAATAACTTGTTAGTACCTGATTGTTTGTtgattattgtattaataatcaCATTAGTTTATGCATAATTTAACCATCaggaactcatgatatgttaaagtataattatatcatgactttacatGAAgaggcacatcatcattaacccattcttaactactcatgaactccttatgcacatCTGTCTAGTGTGTTTATactgaatgagaaaaaaaaagggttctgtaaacatcatgaacagtttaaacacaggagttcatgagttgagttaatggtgatgtgccctccaagtaaagtcatgacataattatacattaacagctttTGAGATCATGTTGGttgcatttagcttaaacttaaatctTAATTTAAGCACTTAATTGTTAGTgtgaactaacaagtaattaataTGGCCtatattcacacatgaactcatgtgattaatgttgtagttaaagttagttcataatTAGCGCGCACCTTAGTTcatcattattttataataaagtaatgtttagtttacatattaacacatcattattcacaTACTGTTGTTGTACAGTGTTTGCCAAAGTTGCAATGCGACAAAATAACAAGCATTATGAAATCATGTCAACTAGATTTCCTAAATAAACCACTACCTCTCATAATCCAATC
>TCONS_00019653
GGGCGCACTGGTCCTCCTGGTCTTCCAGGACGTCAGGGACCAAGCGGATGGCAAGGACCAACTGGGCCTAAAGGGGAGAAAGGTGACCCGGGATTGATGGGATTGCCAGGGGCTAGAGGACCAATGGGACCCAAGGGCTTACATGGATTTAAAGGGGAAAAAgGTTCACAAGGTTTCAGAGGTGAAATTGGCTTAAAAGGTGACCGAGGATCAATGGGTCTACCTGGAATGCTGGGAcaaaagGGTGAAATGGGCCCTAAAGGAGAACCTGGAAGCTCGGGAAACAGGGGACCCACTGGCCGCCCAGGAAAAAGAGGAAAGCAGGGGTCAAAAGGTGACACTGGTGCAATTGGACCCATGGGACCTGGAGGCCCTCCTGGGGCCCCTGGTCATCCTGGCCCTCCTGGAGTGTCCGCCTCagGACTGTATATGGTCGGACAAAAAGGAGACAAAGGACAACAAGGTAGTCCGGGTCGCTGTAGCTGTAATGTCCCAGCCAACCCCTCTTTGGACCACCTGCACTGGAGTATCTATCCCAGAGTGCCTGCAATATTTGTGGTGAATAATGAACAGGAGCTGAACCGTGTCCAGACTGAAAATGCGTTGGCCTTTCGTAAAGATCAGAGGTCACTTTACTTTAAAGACACTGGCGGCTGGATGCCAATTCAGTTAACACCGTTCCAGTCGATGGAGAGCGATCCTGATCCGGAGGGATTCTGCGGAGACAGCATTGTGCAAGTTGAAAACGGAGAGGAGTGTGATGACGGAAATAAGGTGGTCACAGATGGCTGTGTCAAATGCAAACTTGCATATTGTGGGGATGGATATCGCTACGAAGAGGCTGAAGAGTGTGATGGAAAGGACTTTGGCTTTCACACATGCAGATCCTTTTTGCCTGGATCCTATGGGCACCTCAAGTGCACTGCTGACTGTTTCATAGACTCAACAAACTGCAAGTATTTCACATGA

Function

symbol description
colq Predicted to enable heparin binding activity. Predicted to be an extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to be active in extracellular matrix and extracellular space. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 5. Orthologous to human COLQ (collagen like tail subunit of asymmetric acetylcholinesterase).

GO:

id name namespace
GO:0030198 extracellular matrix organization biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component
GO:0008201 heparin binding molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-119 Predicted to enable heparin binding activity. Predicted to be an extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to be active in extracellular matrix and extracellular space. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 5. Orthologous to human COLQ (collagen like tail subunit of asymmetric acetylcholinesterase).

Ensembl:

ensembl_id ENSDARG00000019692

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019652 False 6677 mRNA 0.39 17 20198064 20238985
TCONS_00019653 True 969 mRNA 0.52 12 20220225 20234554

Neighbor

gene id symbol gene type direction distance location
XLOC_009843 hacl1 coding upstream 3679 20167811 ~ 20194385 (+)
XLOC_009842 c16h2orf66 coding upstream 33610 20161805 ~ 20164454 (+)
XLOC_009841 ankrd28b coding upstream 43205 20055878 ~ 20154859 (+)
XLOC_009840 CU855688.1 coding upstream 388947 19805021 ~ 19809117 (+)
XLOC_009839 twist1b coding upstream 463915 19732543 ~ 19734149 (+)
XLOC_009845 fkbp14 coding downstream 55991 20294976 ~ 20305104 (+)
XLOC_009846 cpvl coding downstream 257706 20496691 ~ 20515806 (+)
XLOC_009847 NA coding downstream 291140 20530125 ~ 20531772 (+)
XLOC_009848 NA coding downstream 445955 20684940 ~ 20695517 (+)
XLOC_009849 jazf1b coding downstream 499755 20738740 ~ 20800498 (+)
XLOC_009837 BX005389.4 non-coding upstream 482854 19686713 ~ 19715210 (+)
XLOC_009838 BX005389.1 non-coding upstream 493526 19704424 ~ 19704538 (+)
XLOC_009833 NA non-coding upstream 684073 19508738 ~ 19513991 (+)
XLOC_009832 NA non-coding upstream 816772 19380866 ~ 19381292 (+)
XLOC_009854 mir196d non-coding downstream 674428 20913413 ~ 20913484 (+)
XLOC_009859 NA non-coding downstream 902063 21141048 ~ 21142516 (+)
XLOC_009862 NA non-coding downstream 1395402 21634387 ~ 21634836 (+)

Expression


Co-expression Network