G228651


Basic Information

Item Value
gene id G228651
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 5784483 ~ 5787690 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU259475
GTTGCATTCAACAAATGAATCCATCATTTTATTTACATATTAAAATGAGTGAACCACATAGCTTACAAAAGATCTTATCAAAACAAATCTAATTTAAAGTGCATCGCTTGAATGAAAATAGATAAATAAATATTCAAAAAACAGGAAATAAAATAACACTTCATAAAAAAATAAAATACATTAGCAAGTGGCTTTAGTGCCTTTATCTATCGCAACACAATTTAACTTAATTTTAAAATGACCTAAGATCACAGTTTGTCAGGTCTTTGCCCTTTAAAACTTGTCTGAGACTGACAATTAGACTAACTTCATGGAAAAACTTGACATTTACCACACAGAAGACTAACCACACGTCACAGCCATATATGGTCACAGCATCAGTCACTGCAGTCAAATGGAACATTGACATTTCAGATGATCTGCAGACATACATCCTAAACATATACTATTGTTGAAGGTGAAATGAAAATGCTGTAGTAGACTATATTACTCTTAGAAGATTGGCAGGACAGAAGTTCTTCGTCTGTTTCATCAATATCTCAGATACAAGTTATCTTGGGTTGATGTAATAAGATCACACTAGTAGTCAAGTACACAATGTCACAATGTCACAATGACATGTGACTATTATATTTTCCATGAGGGCTATTGGGTGTAGCGGTGTGTCAGTGACGCCACTATCGTTCGGAAACGACAACTATTTATAGTTTGTATTGCCATAAACAATCAAGAACAGGTAGTCAGTTGATGCCATCTACAGCTTTATCCAAACAAGTTGAGTTATTGCCATGGTGTTAGTTAAAAGGGTGGTTGATCTCCTTATTTAGAGTCTGTCAGTTTGTACACACATAGCATCAAACAAAAACTTCCTTTAAGCACCTTTGTAGATTTGTCACAGTCTTTGAGGTCAAAGCTGCAACCAGTATATCTGAAAGTTAGTGAGGCCAGTTCAAGATTTCTTGACTGATACTGTCCGTACGCTGATACTAAAATGCAGTGCCACTGTTTTCTCTGTCTAGCACAGAATAAGGGCACAAAACGTCTGTCTCGAACTGCAGAAGTTGGCCCATGAAAGCTAGATTGGGTGAGATGACTTGTCGGCGGCGTTTTACAAAGTCAAAGGCCTCGTCCAGACGGACACGTCGAGCGTGTATGAGGTACGCTAGGCAGATGGTGGCTGACCGGGAGATTCCTGCTTGACAGTGGACCAGCACTCGCCCGCCACTCTCTTTTATCGAATCTGCAGATGCAATGAAGGTGAGAGTTAGTTTTTAGCTCGTCATTATTTTTCTGAATGATTCAGAAATCTCTTTTAACCATTAGGACTTACCAATAAAGTGGATGGCCTCTGGAAAAAGCACGCGTATGTCTGCGGCTAGACTGTCCTCCACCTTCAGAGTTTTGTACTGAAGTTCCTCCTCAAACAGGTTTGGACAGGAAGAGGATACGTTGAGCACAGCCGTGATCCCACATCGCTCCAGAGTCTCCCGTCTGGACGAGTGATGTGCACTGCCCAGGAAGAGGAAGGGGAGGATTTCAACTGGACCACCTGATCATAGAGAGGAGTCTTTCTTCCGGACACAACGGGCTCTGGTTCACTGAGAGCAGGATAATTTGAGCACATGACAGGAGTGCTAAAGCAGAGCTCTGGATAAAGTGCAAGGAACCCATCAAATCCACCTAGAAATGGTCAAAGAAAACATTTTTTGTTAATTTTGCACATTTCATTTTATAGAGCAAGCAAACATCTCCACAATTTTAATAGGCTTCCAAGTGCAGCAAAAGTTAAATCACCAAATTCCTTTTTTTTTTATTAGAAATAACCTTTGATTAACATGTAAAACACTAAAATAATGTCAACCTTTTAATATTATATTTATTTATTTATTCATTCATTTTCAGTTTACTTGAATAAAACAGTTCATTCAGATTATTTTTATGCAAGCCTACCTGACAAAACAGTTTTACAGTGCAACATTTTGCCATTTGCAAATATATATGAGCTATTTATGTTTATTAAATATAATTACTTTCGTTGATATAAGATAATATAGTCAGGTTGAGTCTTATTAAATCATGTTATTCCAGTTAATTCAAATGTTACCACATTTTAACTTTTTAGGTTTCCTTCCAAACAATGTAAATGTATTTAATAATATAAATAAATATATAGAAATATAAAATATAGAAATTTAGAACTAAATTAAGGTATTCCAAAAAAGAATGACAACATGTAGTCAGGGTGAGTCATATTAAATCATTGTTCCAGTTAATTTAGATGTTACCACATGAAACCATTTTTTAGAGTATAAAATACTTTTTTTTTTTTTTTTTTCTCAGCAATTGAACTGAATTTAAGTATTCACCAAAAACAATGACAACATTTCTAGTTTTGTGAACTTTACCTTGTAAGAAGCAGATGTGCGTCGAAGCAGACTGGACCTCTAACTGAAGGGCACTGACGAGGAGACTGGCCAGACTTTCGCTCTTCAAATCCCTGACCGACCGACTGTTTTCATCCAGGACCACCACCGGAGAAAAGTCCCCGTTCCGCAGCTGGGCCAGAAGCGCCTTGTCGGCCACCAACCATTCCAGAGACACCACGGAGCTCTTGGATCTCCGTCTCAGCATGGAATTCCAGTTGACGTTGCGGGACTCGAGGATGTGCGTTCGGGAGAAGGCAAGGAAAGGCCGACAGTCCAACACGATGCATCCCCCAGACGCGAAGAGCTCAGAGGGAGTCCGCAAAATATGAACTAACTCACTACCTGAGATCTCGAGAGGGTCGCCAATACCCATGACCTCTCCAGACAAACAACAGTCGTGAGTAGAAACGGATATTCTTCACAGCATCAACAACAGCGCGTTCAATATGGGAACGTATTTTTTTGCCCACTGGAAATTAAGTACTATGAACAATAACAAAAAAAGATAGATGACACAAAACAATATTATTGTGTCCGTAGAGGCCTGGTGTGTTTTCACAGTATTATTACTTTAAAATGAACATAGAATAATTTACTCTTTAACTGTAAATATATAATCTTCGTCTGTATTTCGTCAAAGCTTAGTTTTAAAGTCCTTTATTTGTCAGCAGATG
>TU259476
GTTGCATTCAACAAATGAATCCATCATTTTATTTACATATTAAAATGAGTGAACCACATAGCTTACAAAAGATCTTATCAAAACAAATCTAATTTAAAGTGCATCGCTTGAATGAAAATAGATAAATAAATATTCAAAAAACAGGAAATAAAATAACACTTCATAAAAAAATAAAATACATTAGCAAGTGGCTTTAGTGCCTTTATCTATCGCAACACAATTTAACTTAATTTTAAAATGACCTAAGATCACAGTTTGTCAGGTCTTTGCCCTTTAAAACTTGTCTGAGACTGACAATTAGACTAACTTCATGGAAAAACTTGACATTTACCACACAGAAGACTAACCACACGTCACAGCCATATATGGTCACAGCATCAGTCACTGCAGTCAAATGGAACATTGACATTTCAGATGATCTGCAGACATACATCCTAAACATATACTATTGTTGAAGGTGAAATGAAAATGCTGTAGTAGACTATATTACTCTTAGAAGATTGGCAGGACAGAAGTTCTTCGTCTGTTTCATCAATATCTCAGATACAAGTTATCTTGGGTTGATGTAATAAGATCACACTAGTAGTCAAGTACACAATGTCACAATGTCACAATGACATGTGACTATTATATTTTCCATGAGGGCTATTGGGTGTAGCGGTGTGTCAGTGACGCCACTATCGTTCGGAAACGACAACTATTTATAGTTTGTATTGCCATAAACAATCAAGAACAGGTAGTCAGTTGATGCCATCTACAGCTTTATCCAAACAAGTTGAGTTATTGCCATGGTGTTAGTTAAAAGGGTGGTTGATCTCCTTATTTAGAGTCTGTCAGTTTGTACACACATAGCATCAAACAAAAACTTCCTTTAAGCACCTTTGTAGATTTGTCACAGTCTTTGAGGTCAAAGCTGCAACCAGTATATCTGAAAGTTAGTGAGGCCAGTTCAAGATTTCTTGACTGATACTGTCCGTACGCTGATACTAAAATGCAGTGCCACTGTTTTCTCTGTCTAGCACAGAATAAGGGCACAAAACGTCTGTCTCGAACTGCAGAAGTTGGCCCATGAAAGCTAGATTGGGTGAGATGACTTGTCGGCGGCGTTTTACAAAGTCAAAGGCCTCGTCCAGACGGACACGTCGAGCGTGTATGAGGTACGCTAGGCAGATGGTGGCTGACCGGGAGATTCCTGCTTGACAGTGGACCAGCACTCGCCCGCCACTCTCTTTTATCGAATCTGCAGATGCAATGAAGGTGAGAGTTAGTTTTTAGCTCGTCATTATTTTTCTGAATGATTCAGAAATCTCTTTTAACCATTAGGACTTACCAATAAAGTGGATGGCCTCTGGAAAAAGCACGCGTATGTCTGCGGCTAGACTGTCCTCCACCTTCAGAGTTTTGTACTGAAGTTCCTCCTCAAACAGGTTTGGACAGGAAGAGGATACGTTGAGCACAGCCGTGATCCCACATCGCTCCAGAGTCTCCCGTCTGGACGAGTGATGTGCACTGCCCAGGAAGAGGAAGGGGAGGATTTCAACTGGACCACCCTGGTAATGAAAAAAGATACAAATCAATGAGTATATTTCAAAGATATTGTGTTATATTAAAAGTCATTGGATAATTCATTATGATTTTGAGATTTCTAATAACCAACCTGATCATAGAGAGGAGTCTTTCTTCCGGACACAACGGGCTCTGGTTCACTGAGAGCAGGATAATTTGAGCACATGACAGGAGTGCTAAAGCAGAGCTCTGGATAAAGTGCAAGGAACCCATCAAATCACCTTGTAAGAAGCAGATGTGCGTCGAAGCAGACTGGACCTCTAACTGAAGGGCACTGACGAGGAGACTGGCCAGACTTTCGCTCTTCAAATCCCTGACCGACCGACTGTTTTCATCCAGGACCACCACCGGAGAAAAGTCCCCGTTCCGCAGCTGGGCCAGAAGCGCCTTGTCGGCCACCAACCATTCCAGAGACACCACGGAGCTCTTGGATCTCCGTCTCAGCATGGAATTCCAGTTGACGTTGCGGGACTCGAGGATGTGCGTTCGGGAGAAGGCAAGGAAAGGCCGACAGTCCAACACGATGCATCCCCCAGACGCGAAGAGCTCAGAGGGAGTCCGCAAAATATGAACTAACTCACTACCTGAGATCTCGAGAGGGTCGCCAATACCCATGACCTCTCCAGACAAACAACAGTCGTGAGTAGAAACGGATATTCTTCACAGCATCAACAACAGCGCGTTCAATATGGGAACGTATTTTTTTGCCCACTGGAAATTAAGTACTATGAACAATAACAAAAAAAGATAGATGACACAAAACAATATTATTGTGTCCGTAGAGGCCTGGTGTGTTTTCACAGTATTATTACTTTAAAATGAACATAGAATAATTTACTCTTTAACTGTAAATATATAATCTTCGTCTGTATTTCGTCAAAGCTTAGTTTTAAAGTCCTTTATTTGTCAGCAGATG
>TU259481
GTTGCATTCAACAAATGAATCCATCATTTTATTTACATATTAAAATGAGTGAACCACATAGCTTACAAAAGATCTTATCAAAACAAATCTAATTTAAAGTGCATCGCTTGAATGAAAATAGATAAATAAATATTCAAAAAACAGGAAATAAAATAACACTTCATAAAAAAATAAAATACATTAGCAAGTGGCTTTAGTGCCTTTATCTATCGCAACACAATTTAACTTAATTTTAAAATGACCTAAGATCACAGTTTGTCAGGTCTTTGCCCTTTAAAACTTGTCTGAGACTGACAATTAGACTAACTTCATGGAAAAACTTGACATTTACCACACAGAAGACTAACCACACGTCACAGCCATATATGGTCACAGCATCAGTCACTGCAGTCAAATGGAACATTGACATTTCAGATGATCTGCAGACATACATCCTAAACATATACTATTGTTGAAGGTGAAATGAAAATGCTGTAGTAGACTATATTACTCTTAGAAGATTGGCAGGACAGAAGTTCTTCGTCTGTTTCATCAATATCTCAGATACAAGTTATCTTGGGTTGATGTAATAAGATCACACTAGTAGTCAAGTACACAATGTCACAATGTCACAATGACATGTGACTATTATATTTTCCATGAGGGCTATTGGGTGTAGCGGTGTGTCAGTGACGCCACTATCGTTCGGAAACGACAACTATTTATAGTTTGTATTGCCATAAACAATCAAGAACAGGTAGTCAGTTGATGCCATCTACAGCTTTATCCAAACAAGTTGAGTTATTGCCATGGTGTTAGTTAAAAGGGTGGTTGATCTCCTTATTTAGAGTCTGTCAGTTTGTACACACATAGCATCAAACAAAAACTTCCTTTAAGCACCTTTGTAGATTTGTCACAGTCTTTGAGGTCAAAGCTGCAACCAGTATATCTGAAAGTTAGTGAGGCCAGTTCAAGATTTCTTGACTGATACTGTCCGTACGCTGATACTAAAATGCAGTGCCACTGTTTTCTCTGTCTAGCACAGAATAAGGGCACAAAACGTCTGTCTCGAACTGCAGAAGTTGGCCCATGAAAGCTAGATTGGGTGAGATGACTTGTCGGCGGCGTTTTACAAAGTCAAAGGCCTCGTCCAGACGGACACGTCGAGCGTGTATGAGGTACGCTAGGCAGATGGTGGCTGACCGGGAGATTCCTGCTTGACAGTGGACCAGCACTCGCCCGCCACTCTCTTTTATCGAATCTGCAGATGCAATGAAGGTTTGGACAGGAAGAGGATACGTTGAGCACAGCCGTGATCCCACATCGCTCCAGAGTCTCCCGTCTGGACGAGTGATGTGCACTGCCCAGGAAGAGGAAGGGGAGGATTTCAACTGGACCACCCTGGACCACCACCGGAGAAAAGTCCCCGTTCCGCAGCTGGGCCAGAAGCGCCTTGTCGGCCACCAACCATTCCAGAGACACCACGGAGCTCTTGGATCTCCGTCTCAGCATGGAATTCCAGTTGACGTTGCGGGACTCGAGGATGTGCGTTCGGGAGAAGGCAAGGAAAGGCCGACAGTCCAACACGATGCATCCCCCAGACGCGAAGAGCTCAGAGGGAGTCCGCAAAATATGAACTAACTCACTACCTGAGATCTCGAGAGGGTCGCCAATACCCATGACCTCTCCAGACAAACAACAGTCGTGAGTAGAAACGGATATTCTTCACAGCATCAACAACAGCGCGTTCAATATGGGAACGTATTTTTTTGCCCACTGGAAATTAAGTACTATGAACAATAACAAAAAAAGATAGATGACACAAAACAATATTATTGTGTCCGTAGAGGCCTGGTGTGTTTTCACAGTATTATTACTTTAAAATGAACATAGAATAATTTACTCTTTAACTGTAAATATATAATCTTCGTCTGTATTTCGTCAAAGCTTAGTTTTAAAGTCCTTTATTTGTCAGCAGATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU259475 False 3100 lncRNA 0.38 2 5784483 5787690
TU259476 False 2482 lncRNA 0.42 2 5784483 5787690
TU259481 True 1960 TUCP 0.42 3 5784483 5787690

Neighbor

gene id symbol gene type direction distance location
CI01000053_05732296_05750809 NPC1L1 coding downstream 33674 5731378 ~ 5750809 (-)
CI01000053_05692640_05695728 MYL7, MYLC2A, MYL7.L coding downstream 88755 5692635 ~ 5695728 (-)
CI01000053_05690377_05690558 NA coding downstream 93706 5690377 ~ 5690777 (-)
CI01000053_05675892_05686424 NA coding downstream 98059 5674979 ~ 5686424 (-)
CI01000053_05621226_05622308 APJA, APLNRA, APLNR coding downstream 161985 5620409 ~ 5622498 (-)
CI01000053_06038638_06043939 FAHD2B, FAHD2A coding upstream 250646 6038336 ~ 6043939 (-)
CI01000053_06060129_06071679 RNF10 coding upstream 271919 6059609 ~ 6071679 (-)
CI01000053_06162569_06179766 GOLGA1 coding upstream 374389 6162079 ~ 6180102 (-)
CI01000053_06287804_06296687 NA coding upstream 499524 6287214 ~ 6296687 (-)
CI01000053_06308157_06310323 NA coding upstream 519912 6307318 ~ 6310466 (-)
G228641 NA non-coding downstream 21930 5762299 ~ 5762553 (-)
G228639 NA non-coding downstream 26887 5757254 ~ 5757596 (-)
G228622 NA non-coding downstream 117722 5666403 ~ 5666761 (-)
G228620 NA non-coding downstream 120751 5663499 ~ 5663732 (-)
G228619 NA non-coding downstream 121321 5662954 ~ 5663162 (-)
G228666 NA non-coding upstream 11379 5799069 ~ 5799843 (-)
G228668 NA non-coding upstream 15300 5802990 ~ 5803250 (-)
G228689 NA non-coding upstream 34805 5822495 ~ 5822814 (-)
G228691 NA non-coding upstream 35796 5823486 ~ 5823803 (-)
G228700 NA non-coding upstream 52157 5839847 ~ 5840102 (-)
G227604 NA other downstream 1696743 4087237 ~ 4087740 (-)
CI01000053_03551506_03551965 NA other downstream 2231512 3550333 ~ 3552847 (-)
G226963 NA other downstream 2787215 2996717 ~ 2997268 (-)
G226826 NA other downstream 3217411 2565892 ~ 2567072 (-)
CI01000053_02225226_02226481 YPELD, YPEL2B, YPEL1, YPELC, YPEL2 other downstream 3547087 2225210 ~ 2226481 (-)
G228750 NA other upstream 143902 5931592 ~ 5932241 (-)

Expression


Co-expression Network