XLOC_009846 (cpvl)


Basic Information

Item Value
gene id XLOC_009846
gene name cpvl
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 20496691 ~ 20515806 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019656
CTATTTTAGACTAAAGTTCCTGGTTTAGTTTGATCACATGACACAGCGCCCATGTAGTCATGTGACTGCTGCAACTACAGCGTGACAACAACCTGATTTTTAGTTTACTCATGTTTCATCTGCCAGTGTAAACGGTTTCTGGATTTCTCGTTGGATTTTGGCCTTTGGGTAAGCCAGTCATTGAttagaaaaaaactattttaattaggaAACATTTTATTGTGTAACTCAACTACCAATATATCACAATtgctatttgtttgtttattctgttaTGCATTATATGCCATGTTTGTCCTTTAATTGACCGCATTTGCACTGTTCGACGGGATTTGTCGTTGCTTATTTTCTCTTATAATATGTTTGGGCATGTAAAGACAGACGGCAACTTGAGCCTTTTAATATCAAGCTCGATCATTAATCCCTGTGTCACATTTCTTTGCTGTCGCTACTTCAGACTTCACAATGCTGAAGGAAACGCTGAGGCTGCTCTTCGTCTGGGCTGTTCTGGAGTCAGTTTGCTCACGCGGATGTTCCTCATTTTTCTGCCGCAAAACACGTCGGGTGAGCGGTTCGCGTTTTGGAGCTGACCCGGGCAAACCACTGATGCTCACCCCTTATCTGGAGCAAGGCAAGATAGAAGAAGCCAAAAAACTGAGTTTGGTGGGTCCCCTTCCTGGTGCCAATGTCAAGAGTTACTCTGGATATCTCACTGTGAACAAGACCTACAACAGCAACCTTTTCTTCTGGTTCTTCCCTGCCCAGGAGAGACCAGAGACTGCTCCGGTTCTGCTGTGGCTGCAAGGAGGACCAGGAGGAACCTCTATGTTTGGCTTGTTTGTGGAGCACGGCCCATATTTTGTATATAAGAATCTCACATTGGGCTATAGGCATTTCCCCTGGACATCACGCTATTCAGTTCTCTACATTGACAACCCGGTTGGGACAGGATGGAGTTTCACTGAGGATGACCGAGGGTTTGCCCAAAACCAGGATGATGTGGGCAGAGACTTGTATAGTGCCCTGACTCAATTCTTCCAGATATTTAGGGAGTTCCAGTCAAATCCGTTTTATGCTACTGGCGAGTCATATGCAGGAAAGTATGTTCCAGCGATTGGCTACTACATCCACAGGAACAATCCCTCCGCTAAAGTGAAGATCAATTTTAAAGGAGTGGCCATTGGAGATGGATTGTGTGACCCTGAACtgATGCTGGGAGGCTATGCAGATTTTCTCTATCAGACGGGTCTGGTGGATGAACTGCAGAGGCAGCATGTGAAGATGCAGACAGATGCAGGAGTCAAACTGATTCAGGAGCAGCGATGGGTGGAGGCCTTCCAGGTGTTTGACAGCTTACTGAATGGGGATCTTGTTCCTTATCCTTCATACTTCCAGAACGTCACTGGTTGCACCAACTACTTCAACTACATGCAGTGTCAGGAACCTCCAGATCAGGAGTATTTTTCTTCATTCGTGACTCTACCAGAGGTTCGACGCTCCATCCATGTTGGGAATCTGACCTTCAACGATGGCTCAGATGTGGAGAAACATCTGCTTCAGGATGTCATGAAGTCCATCAAACCCTGGTTGGGCGTCCTGATGGAGAACTATAGAGTGTTAATCTACAGTGGTCAGCTGGATGTGATCGTTGCGGCCCCTCTTACTGAGCGCTTCTTGCCCACCGTGAGCTGGTCTGGAGCAGACGAGTATAAGACCGCAGAGCGATTCCCCTGGAAGGTTCAGCCCAGCGACACTGAAGTCGCAGGATACGTTCGACAAGTCAGAGAGTTCTTTCAGGTTATTGTCAGGGGAGGCGGGCACATTTTACCTTATGACCAACCAGAGAGATCATTCGACATGATAGACAGATTCCTCTCTACAGATGGATTTACATCTCACTGATAGACTGAGATCAAACATGAAATGTGACCAGTGAATGAATCCGTGTTCACTAGCGTAATGTATATTTCAATGCGATATACCGTGCTCTTATGAAGGCACTGTAatggtttatattttttattaggcTCTGTTAAGTGTAAGGGCTGTTTTATTGTACATGATTTGAAGATGATTTTTGATTAAAGTATGATTTGAATTTAATGTTTTACCTTTTGGTCTTTTAATAATCTATTCCAATGGTTATTCTTATTTATGTGGAGTGATCAGAACTTTTAGTTATGAAtaaagtcatttagcagacaacttttatccaaacagcttacaaaagattttttacaaagaaaaccacaatttaaagGAAATTACAATTTGATTAGCCCTCCTTTTGAAGGcttaaagtcttatttattttagttggaaaggaataaacacagttttctataataataatataataataataataattcatattcattATTTTGTTCCCGAATGAGTGCAGAACGAGCCACTGCCGTCCAATGGAgaaatgacttgcctagttaccttAATTACCTATAGTTCAagtgcactttaagctgaattatcttttaaattaaccagtaaaacaaaacattatatgCTCTAGAATTACACGTTTATCTTAAAGTTGCCAACAGCGCAGATATTATTCAAAATGAGCGAAATTTATGTTGAATAAATGCCAGTGtcgcaaaagtttttttttgtctcctCGTCCAATTTTACAATCTCCATCGTTTGTCCTGCAGAGGGCGGCAACTCGCAGTTACAAGGCGTGtgtaatttttgttgttgtttttaattcagTGCCACAAGAACAAGAGGTATTACAATTCAAAGTTTTCTGGAagtgaaaaatatatatgtaaaaaaatacatttacatcaaATGGCCTGTTTTTAGGGCTTTTTCGTTTTGTGATTTTGTTCTGAAAAGATTTACATATAGCCTTTAATTTGAAGTCATGTATATGGCATTTTCCTAATagcataaataaaaatttgttgtCCTTTACAGTTCAGGTTCTCATTAGAATAAAAcagtacataaaataaacaattttcta
>TCONS_00019657
GACACAGCGCCCATGTAGTCATGTGACTGCTGCAACTACAGCGTGACAACAACCTGATTTTTAGTTTACTCATGTTTCATCTGCCAGTGTAAACGGTTTCTGGATTTCTCGTTGGATTTTGGCCTTTGGACTTCACAATGCTGAAGGAAACGCTGAGGCTGCTCTTCGTCTGGGCTGTTCTGGAGTCAGTTTGCTCACGCGGATGTTCCTCATTTTTCTGCCGCAAAACACGTCGGGTGAGCGGTTCGCGTTTTGGAGCTGACCCGGGCAAACCACTGATGCTCACCCCTTATCTGGAGCAAGGCAAGATAGAAGAAGCCAAAAAACTGAGTTTGGTGGGTCCCCTTCCTGGTGCCAATGTCAAGAGTTACTCTGGATATCTCACTGTGAACAAGACCTACAACAGCAACCTTTTCTTCTGGTTCTTCCCTGCCCAGGAGAGACCAGAGACTGCTCCGGTTCTGCTGTGGCTGCAAGGAGGACCAGGAGGAACCTCTATGTTTGGCTTGTTTGTGGAGCACGGCCCATATTTTGTATATAAGAATCTCACATTGGGCTATAGGCATTTCCCCTGGACATCACGCTATTCAGTTCTCTACATTGACAACCCGGTTGGGACAGGATGGAGTTTCACTGAGGATGACCGAGGGTTTGCCCAAAACCAGGATGATGTGGGCAGAGACTTGTATAGTGCCCTGACTCAATTCTTCCAGATATTTAGGGAGTTCCAGTCAAATCCGTTTTATGCTACTGGCGAGTCATATGCAGGAAAGTATGTTCCAGCGATTGGCTACTACATCCACAGGAACAATCCCTCCGCTAAAGTGAAGATCAATTTTAAAGGAGTGGCCATTGGAGATGGATTGTGTGACCCTGAACtgATGCTGGGAGGCTATGCAGATTTTCTCTATCAGACGGGTCTGGTGGATGAACTGCAGAGGCAGCATGTGAAGATGCAGACAGATGCAGGAGTCAAACTGATTCAGGAGCAGCGATGGGTGGAGGCCTTCCAGGTGTTTGACAGCTTACTGAATGGGGATCTTGTTCCTTATCCTTCATACTTCCAGAACGTCACTGGTTGCACCAACTACTTCAACTACATGCAGTGTCAGGAACCTCCAGATCAGGAGTATTTTTCTTCATTCGTGACTCTACCAGAGGTTCGACGCTCCATCCATGTTGGGAATCTGACCTTCAACGATGGCTCAGATGTGGAGAAACATCTGCTTCAGGATGTCATGAAGTCCATCAAACCCTGGTTGGGCGTCCTGATGGAGAACTATAGAGTGTTAATCTACAGTGGTCAGCTGGATGTGATCGTTGCGGCCCCTCTTACTGAGCGCTTCTTGCCCACCGTGAGCTGGTCTGGAGCAGACGAGTATAAGACCGCAGAGCGATTCCCCTGGAAGGTTCAGCCCAGCGACACTGAAGTCGCAGGATACGTTCGACAAGTCAGAGAGTTCTTTCAGGTTATTGTCAGGGGAGGCGGGCACATTTTACCTTATGACCAACCAGAGAGATCATTCGACATGATAGACAGATTCCTCTCTACAGATGGATTTACATCTCACTGATAGACTGAGATCAAACATGAAATGTGACCAGTGAATGAATCCGTGTTCACTAGCGTAATGTATATTTCAATGCGATATACCGTGCTCTTATGAAGGCACTGTAatggtttatattttttattaggcTCTGTTAAGTGTAAGGGCTGTTTTATTGTACATGATTTGAAGATGATTTTTGATTAAAGTATGATTTGAATTTAA
>TCONS_00019658
TGACAACAACCTGATTTTTAGTTTACTCATGTTTCATCTGCCAGTGTAAACGGTTTCTGGATTTCTCGTTGGATTTTGGCCTTTGGCCAAAAAACTGAGTTTGGTGGGTCCCCTTCCTGGTGCCAATGTCAAGAGTTACTCTGGATATCTCACTGTGAACAAGACCTACAACAGCAACCTTTTCTTCTGGTTCTTCCCTGCCCAGGAGAGACCAGAGACTGCTCCGGTTCTGCTGTGGCTGCAAGGAGGACCAGGAGGAACCTCTATGTTTGGCTTGTTTGTGGAGCACGGCCCATATTTTGTATATAAGAATCTCACATTGGGCTATAGGCATTTCCCCTGGACATCACGCTATTCAGTTCTCTACATTGACAACCCGGTTGGGACAGGATGGAGTTTCACTGAGGATGACCGAGGGTTTGCCCAAAACCAGGATGATGTGGGCAGAGACTTGTATAGTGCCCTGACTCAATTCTTCCAGATATTTAGGGAGTTCCAGTCAAATCCGTTTTATGCTACTGGCGAGTCATATGCAGGAAAGTATGTTCCAGCGATTGGCTACTACATCCACAGGAACAATCCCTCCGCTAAAGTGAAGATCAATTTTAAAGGAGTGGCCATTGGAGATGGATTGTGTGACCCTGAACtg

Function

symbol description
cpvl Predicted to enable serine-type carboxypeptidase activity. Predicted to act upstream of or within proteolysis. Is expressed in yolk syncytial layer. Orthologous to human CPVL (carboxypeptidase vitellogenic like).

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004180 carboxypeptidase activity molecular_function
GO:0004185 serine-type carboxypeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-031219-2 Predicted to enable serine-type carboxypeptidase activity. Predicted to act upstream of or within proteolysis. Is expressed in yolk syncytial layer. Orthologous to human CPVL (carboxypeptidase vitellogenic like).

Ensembl:

ensembl_id ENSDARG00000056480

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019656 False 2989 mRNA 0.41 12 20496691 20515806
TCONS_00019657 False 1775 mRNA 0.47 13 20496730 20514920
TCONS_00019658 True 649 processed_transcript 0.47 7 20496773 20504865

Neighbor

gene id symbol gene type direction distance location
XLOC_009845 fkbp14 coding upstream 191587 20294976 ~ 20305104 (+)
XLOC_009844 colq coding upstream 257706 20198064 ~ 20238985 (+)
XLOC_009843 hacl1 coding upstream 302306 20167811 ~ 20194385 (+)
XLOC_009842 c16h2orf66 coding upstream 332237 20161805 ~ 20164454 (+)
XLOC_009841 ankrd28b coding upstream 341832 20055878 ~ 20154859 (+)
XLOC_009847 NA coding downstream 14319 20530125 ~ 20531772 (+)
XLOC_009848 NA coding downstream 169134 20684940 ~ 20695517 (+)
XLOC_009849 jazf1b coding downstream 222934 20738740 ~ 20800498 (+)
XLOC_009850 hibadhb coding downstream 355209 20871015 ~ 20889516 (+)
XLOC_009851 hoxa13b coding downstream 380098 20895904 ~ 20897836 (+)
XLOC_009840 CU855688.1 non-coding upstream 687574 19805021 ~ 19809117 (+)
XLOC_009837 BX005389.4 non-coding upstream 781481 19686713 ~ 19715210 (+)
XLOC_009838 BX005389.1 non-coding upstream 792153 19704424 ~ 19704538 (+)
XLOC_009833 NA non-coding upstream 982700 19508738 ~ 19513991 (+)
XLOC_009832 NA non-coding upstream 1115399 19380866 ~ 19381292 (+)
XLOC_009854 mir196d non-coding downstream 397607 20913413 ~ 20913484 (+)
XLOC_009859 NA non-coding downstream 625242 21141048 ~ 21142516 (+)
XLOC_009862 NA non-coding downstream 1118581 21634387 ~ 21634836 (+)

Expression


Co-expression Network