Gene
RNA
| Item | Value |
|---|---|
| gene id | G229207 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000053 |
| NCBI id | null |
| chromosome length | 7014373 |
| location | 6192641 ~ 6221224 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU260109 | True | 1269 | lncRNA | 0.41 | 4 | 6192641 | 6221224 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000053_06162569_06179766 | GOLGA1 | coding | downstream | 12539 | 6162079 ~ 6180102 (-) |
| CI01000053_06060129_06071679 | RNF10 | coding | downstream | 120962 | 6059609 ~ 6071679 (-) |
| CI01000053_06038638_06043939 | FAHD2B, FAHD2A | coding | downstream | 148702 | 6038336 ~ 6043939 (-) |
| CI01000053_05732296_05750809 | NPC1L1 | coding | downstream | 441832 | 5731378 ~ 5750809 (-) |
| CI01000053_05692640_05695728 | MYL7, MYLC2A, MYL7.L | coding | downstream | 496913 | 5692635 ~ 5695728 (-) |
| CI01000053_06287804_06296687 | NA | coding | upstream | 65990 | 6287214 ~ 6296687 (-) |
| CI01000053_06308157_06310323 | NA | coding | upstream | 86378 | 6307318 ~ 6310466 (-) |
| CI01000053_06662264_06720098 | SLC15A4 | coding | upstream | 440362 | 6661586 ~ 6720662 (-) |
| CI01000053_06768909_06775364 | NA | coding | upstream | 546748 | 6767972 ~ 6776006 (-) |
| CI01000053_06777287_06806952 | NA | coding | upstream | 556018 | 6777242 ~ 6806952 (-) |
| G229212 | NA | non-coding | downstream | 38878 | 6152790 ~ 6153763 (-) |
| G229203 | NA | non-coding | downstream | 53675 | 6133943 ~ 6138966 (-) |
| G229198 | NA | non-coding | downstream | 63891 | 6128436 ~ 6128750 (-) |
| G229167 | NA | non-coding | downstream | 176833 | 6013938 ~ 6015808 (-) |
| G228740 | NA | non-coding | downstream | 272867 | 5919350 ~ 5919774 (-) |
| G229227 | NA | non-coding | upstream | 1436 | 6222660 ~ 6223229 (-) |
| G229235 | NA | non-coding | upstream | 11681 | 6232905 ~ 6233161 (-) |
| G229236 | NA | non-coding | upstream | 13290 | 6234514 ~ 6234794 (-) |
| G229423 | NA | non-coding | upstream | 502000 | 6723224 ~ 6724500 (-) |
| G228750 | NA | other | downstream | 260400 | 5931592 ~ 5932241 (-) |
| G228651 | NA | other | downstream | 404951 | 5784483 ~ 5787690 (-) |
| G227604 | NA | other | downstream | 2104901 | 4087237 ~ 4087740 (-) |
| CI01000053_03551506_03551965 | NA | other | downstream | 2639670 | 3550333 ~ 3552847 (-) |
| G226963 | NA | other | downstream | 3195373 | 2996717 ~ 2997268 (-) |
