XLOC_009847


Basic Information

Item Value
gene id XLOC_009847
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 20530125 ~ 20531772 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021919
CCTTCCTCATTTATCCTTTCCAATTAGATAAAAACGGGGGAATGTGAGAGTAATTGTTCTAACAATAAACAGAAAGGAAAGGACAGCATCTTTTGGCAATGGAAAATTCAGGGCGAAGGCTGTCCAGCTGTCTGAATTTTGTAAAGGCATTGGTCCAGTAGTAGTCCAGGAACAGATGTAGCGGCTGTGTTTCCACAACAACCCGTCCCTGATGTTCTTGACAAGCGGGATGGTGCCTGAAGAATTATACAGACTCCCTTTTTTTAAGCGGACTCGAATGGTAACAGAAAacacaaagaaataaacaaaattgtaatCAGTTTACGTTTACAAAttacaaacagaaataaaagctGCCACAGAGGCACAGAGGTGTGTGTCTGTCCAGAGTTTGCAGTCGGGATGTCCAGCGTCAAGGGTGGAGTCTCTAGTGGATGGGGTTGATATCTGTGCAGTGATTGGGTGCCGTGCTGGAGGTGGTGATGTCCTTGTGTGTCAGTAAAAGCTGTTTCAGTTGTGTCACCTCGTTCTTCAACATGGTGACCTCGTTCTGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021919 True 554 lncRNA 0.44 2 20530125 20531772

Neighbor

gene id symbol gene type direction distance location
XLOC_009846 cpvl coding upstream 14319 20496691 ~ 20515806 (+)
XLOC_009845 fkbp14 coding upstream 225021 20294976 ~ 20305104 (+)
XLOC_009844 colq coding upstream 291140 20198064 ~ 20238985 (+)
XLOC_009843 hacl1 coding upstream 335740 20167811 ~ 20194385 (+)
XLOC_009842 c16h2orf66 coding upstream 365671 20161805 ~ 20164454 (+)
XLOC_009848 NA coding downstream 153168 20684940 ~ 20695517 (+)
XLOC_009849 jazf1b coding downstream 206968 20738740 ~ 20800498 (+)
XLOC_009850 hibadhb coding downstream 339243 20871015 ~ 20889516 (+)
XLOC_009851 hoxa13b coding downstream 364132 20895904 ~ 20897836 (+)
XLOC_009852 hoxa11b coding downstream 372982 20904754 ~ 20907378 (+)
XLOC_009840 CU855688.1 non-coding upstream 721008 19805021 ~ 19809117 (+)
XLOC_009837 BX005389.4 non-coding upstream 814915 19686713 ~ 19715210 (+)
XLOC_009838 BX005389.1 non-coding upstream 825587 19704424 ~ 19704538 (+)
XLOC_009833 NA non-coding upstream 1016134 19508738 ~ 19513991 (+)
XLOC_009832 NA non-coding upstream 1148833 19380866 ~ 19381292 (+)
XLOC_009854 mir196d non-coding downstream 381641 20913413 ~ 20913484 (+)
XLOC_009859 NA non-coding downstream 609276 21141048 ~ 21142516 (+)
XLOC_009862 NA non-coding downstream 1102615 21634387 ~ 21634836 (+)
XLOC_009866 NA non-coding downstream 1342623 21874395 ~ 21877421 (+)
XLOC_009831 NA non-coding upstream 1117704 19375634 ~ 19412421 (+)

Expression


Co-expression Network