XLOC_009848


Basic Information

Item Value
gene id XLOC_009848
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 20684940 ~ 20695517 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021920
ACAAATCGCGGCAAACATGTCTTGTGTCTTGTTGCGCCGGGTGTACGATAGGGCCCATAGACTCGAATTCTCATGCAAAACAGAAATGTACTGGAAAAAGTGCAGAACACAATGAAAATGTGTCGGGGGACACCAAAAAGTGACAAACTTTCTGCTTTCTGTTTACTGCACTTTGTGCAGACCACGTttctctatttgcatgtgttgtgaaacTTTGCTTGTGCGTGAGTTGTCAAATTGATGACGTCAAGTTTGCACCAAAGtttgctgggttcacaccaaatgtggaATTAAGTATTCAAGTGAGTAAATTGCTTACAATTTATTGCCACATGGTGCAAATGACACGGAATGCTCAATTGAAACATCCCATGAGTAAGCTTGTTATAagtaacatttaattaattacttttgttgCGCACTGTATTGTGTCTTTTCCTTTGTCCTGCCTTCTTCTCCCGTCTTCTTGTTTTTTGTTATCCCATAGGCTCTCATTTTTATGTGGTCcggctctgattggctgctggtcatGAAGAGCTATAAAACAGAACTTCCGACAGAGATCGAGGAGCTTAGTTTTGGTGCTATGGTAGCAGACTCACCTGAGAACAGCCCGGGGCGCTGCACACGTACGGCCTTTCCTGCTCCGAGTTCATCACTGTCACTGGCTCCTCATACACCTGAACACAAAGCAGAAATCAGGGGTGCCTCCAGGACTCCAAAATATAAAGACCCACGCTCACATTATGTCACTAACGCATTGTGTGCCAGAGATAGAAAACTCTGCGGTTCGctCACCATGAGAACAGGAATCCCCCGTTCAGTGCCATGATGCTGCTAAATGCCATGGATGACAGACTGACAATGGAATGGTATGCCAACCATTCAGTTTCATGCATACGAAGTGTAATCGGGCCACTTGTCTGACATTGCAGTTGATGCCGACATAGAGCCCACAACTACTGTCACCATAAGGAGTGTTTTACAGTTCAATTTATATCAGGCATTAATTTAGCAGGTGATGAGGTATAGTTTTAGGCATCACACCACTATAGCATTGTGAAAACATTAGTTTTAGCTCAAATAGAAAAGTGTGGTACCAGTTATGCCAAAGTTTTGGTTTGATTTCCAATTAAAGCAAGAACTTAATATGTGTAACTTCGAAGTAATACAAGTTACCTttgataaaaatgtgtaaatgaggTTGACAATGATAGAATACAGTGTggctgtttattttaaatgatttagtgGTGCACCTTAATCCTAAAAATGATTTGGtcatatatcaaaataaaatgactacttctgaatatgtttatttttaagctaagctaaaaataaataactttttaatgttTCACAAT
>TCONS_00021708
CTTTGTCTCCTCAGACTCACCTGAGAACAGCCCGGGGCGCTGCACACGTACGGCCTTTCCTGCTCCGAGTTCATCACTGTCACTGGCTCCTCATACACCTGAACACAAAGCAGAAATCAGGGGTGCCTCCAGGACTCCAAAATATAAAGACCCACGCTCACATTATGTCACTAACGCATTGTGTGCCAGAGATAGAAAACTCTGCGGTTCGctCACCATGAGAACAGGAATCCCCCGTTCAGTGCCATGATGCTGCTAAATGCCATGGATGACAGACTGACAATGGAATGGTATGCCAACCATTCAGTTTCATGCATACGAAGTGTAATCGGGCCACTTGTCTGACATTGCAGTTGATGCCGACATAGAGCCCACAACTACTGTCACCATAAGGAGTGTTTTACAGTTCAATTTATATCAGGCATTAATTTAGCAGGTGATGAGGTATAGTTTTAGGCATCACACCACTATAGCATTGTGAAAACATTAGTTTTAGCTCAAATAGAAAAGTGTGGTACCAGTTATGCCAAAGTTTTGGTTTGATTTCCAATTAAAGCAAGAACTTAATATGTGTAACTTCGAAGTAATACAAGTTACCTttgataaaaatgtgtaaatgaggTTGACAATGATAGAATACAGTGTggctgtttattttaaatgatttagtgGTGCACCTTAATCCTAAAAATGATTTGGtcatatatcaaaataaaatgactacttctgaatatgtttatttttaagctaagctaaaaataaataactttttaatgttTCACAAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021920 False 1367 lncRNA 0.40 3 20684940 20695517
TCONS_00021708 True 785 lncRNA 0.39 2 20688916 20695517

Neighbor

gene id symbol gene type direction distance location
XLOC_009847 NA coding upstream 153168 20530125 ~ 20531772 (+)
XLOC_009846 cpvl coding upstream 169134 20496691 ~ 20515806 (+)
XLOC_009845 fkbp14 coding upstream 379836 20294976 ~ 20305104 (+)
XLOC_009844 colq coding upstream 445955 20198064 ~ 20238985 (+)
XLOC_009843 hacl1 coding upstream 490555 20167811 ~ 20194385 (+)
XLOC_009849 jazf1b coding downstream 43223 20738740 ~ 20800498 (+)
XLOC_009850 hibadhb coding downstream 175498 20871015 ~ 20889516 (+)
XLOC_009851 hoxa13b coding downstream 200387 20895904 ~ 20897836 (+)
XLOC_009852 hoxa11b coding downstream 209237 20904754 ~ 20907378 (+)
XLOC_009853 hoxa10b coding downstream 214669 20910186 ~ 20913003 (+)
XLOC_009840 CU855688.1 non-coding upstream 875823 19805021 ~ 19809117 (+)
XLOC_009837 BX005389.4 non-coding upstream 969730 19686713 ~ 19715210 (+)
XLOC_009838 BX005389.1 non-coding upstream 980402 19704424 ~ 19704538 (+)
XLOC_009833 NA non-coding upstream 1170949 19508738 ~ 19513991 (+)
XLOC_009854 mir196d non-coding downstream 217896 20913413 ~ 20913484 (+)
XLOC_009859 NA non-coding downstream 445531 21141048 ~ 21142516 (+)
XLOC_009862 NA non-coding downstream 938870 21634387 ~ 21634836 (+)
XLOC_009866 NA non-coding downstream 1178878 21874395 ~ 21877421 (+)
XLOC_009868 NA non-coding downstream 1326774 22022291 ~ 22113936 (+)

Expression


Co-expression Network