XLOC_009849 (jazf1b)


Basic Information

Item Value
gene id XLOC_009849
gene name jazf1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 20738740 ~ 20800498 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019659
GGTGCGTGCTTGCGTGCGAGTGCGTGCGCGATCTCCTTTCCGCTCGCGCCGTGCTGCTGCTCTTCAATGTAGCAAAGACCATGACAGGTATCGCCGCCGCCTCCTTCTTCTCCAACATTTGCCAGTTCGGGGGCTGTGGACTGCACTTCGAGTCGCTGGCCGAGCTCATCGTGCACATCGAGGATAATCACATCGATACAGATCCTCGTGTGTTGGAGAAACAGGAACTGCAGCAGCCCACATATGTCGCCCTCAGCTACATTAACAGGTTTATGACAGATGCAGCGCGACGCGAGCATGAATCATTGAAGAAGAAAGTTCAGCCAAAGCTGTCACTCTCACTGATGGGCAGCCTGTCACGCAGCAGTGTGGCCACACCCCCTCGACACAACAGCGGCAACCTCACCCCGCCTGTGACTCCGCCCATTACACCATCATCTTCATTCAGGAGCAGCACCCCGACAGGCAGCGAGTATGACGAGGAGGAGGCTGAATATGAAGAGTCGGACAGTGATGAGTCGTGGACCACCGAAAGTGCCATTAGTTCCGAATACATTCTCAGTTCCATGTGCATGAATGGCGGTGACGAGAAGCCCTTTGCATGTCCTGTGCCTGGATGCAAAAAGAGATACAagAATGTGAATGGTATCAAATACCATGCCAAGAACGGTCACCGCACTCAGATCCGCGTTCGCAAGCCCTTCAAGTGCCGGTGTGGTAAAAGCTACAAAAGCTCTCAGGGGCTCAGACACCACACCATCAACTTCCACCCGCCGGTCTCTGCAGAGATCATCCGCAAGTTGCAGCAGTAGAGagtgc

Function

symbol description
jazf1b Acts upstream of or within cilium assembly and determination of left/right symmetry. Predicted to be active in nucleus. Is expressed in brain; pectoral fin; and pronephric duct. Orthologous to human JAZF1 (JAZF zinc finger 1).

GO:

id name namespace
GO:0007368 determination of left/right symmetry biological_process
GO:0060271 cilium assembly biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041212-56 Acts upstream of or within cilium assembly and determination of left/right symmetry. Predicted to be active in nucleus. Is expressed in brain; pectoral fin; and pronephric duct. Orthologous to human JAZF1 (JAZF zinc finger 1).

Ensembl:

ensembl_id ENSDARG00000056793

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019659 True 819 mRNA 0.54 5 20738740 20800498

Neighbor

gene id symbol gene type direction distance location
XLOC_009848 NA coding upstream 43223 20684940 ~ 20695517 (+)
XLOC_009847 NA coding upstream 206968 20530125 ~ 20531772 (+)
XLOC_009846 cpvl coding upstream 222934 20496691 ~ 20515806 (+)
XLOC_009845 fkbp14 coding upstream 433636 20294976 ~ 20305104 (+)
XLOC_009844 colq coding upstream 499755 20198064 ~ 20238985 (+)
XLOC_009850 hibadhb coding downstream 70517 20871015 ~ 20889516 (+)
XLOC_009851 hoxa13b coding downstream 95406 20895904 ~ 20897836 (+)
XLOC_009852 hoxa11b coding downstream 104256 20904754 ~ 20907378 (+)
XLOC_009853 hoxa10b coding downstream 109688 20910186 ~ 20913003 (+)
XLOC_009854 mir196d coding downstream 112915 20913413 ~ 20913484 (+)
XLOC_009840 CU855688.1 non-coding upstream 929623 19805021 ~ 19809117 (+)
XLOC_009837 BX005389.4 non-coding upstream 1023530 19686713 ~ 19715210 (+)
XLOC_009838 BX005389.1 non-coding upstream 1034202 19704424 ~ 19704538 (+)
XLOC_009859 NA non-coding downstream 340550 21141048 ~ 21142516 (+)
XLOC_009862 NA non-coding downstream 833889 21634387 ~ 21634836 (+)
XLOC_009866 NA non-coding downstream 1073897 21874395 ~ 21877421 (+)
XLOC_009868 NA non-coding downstream 1221793 22022291 ~ 22113936 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_08217170_08228700 JAZF1 coding CI01000016 null 8217084 ~ 8228778 (+)
bowfin (Amia calva) AMCG00021649 jazf1,LOC108242006,LOC108441515,LOC107550831,LOC572950 coding CM030130.1 CM030130.1 23885292 ~ 23892646 (-)