G229504


Basic Information

Item Value
gene id G229504
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 6840054 ~ 6840457 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU260444
ACAGAATTGTTGACATTTTTGCAGATTTATTAAAAAAGAAAAACTGAAATATCACATGGTCCTAAGTATTCAGACCCTTTGCTGTGACACTCATATATTTAACTCAGGTGTTGTCCATTTCTTCTGATCATCCTTGAGATGGTTCTACACCTTCATTTGAGTCCAGCTGTGTTTGATTATACTGATTGGACTTGATTAGGAAAGCCACACACCTGTCTATATAAGACCTTACAGCTCACAGTGCATGTCAGAGCAAATGAGAATCATGAGGTCAAAGGAATTGCCTGAAGAGCTCAGAGACAGAATTGTGGCAAGGCACAGATCTGGCCAAGGTTACAAAAAAATTTCTGCTGCACTTAAGGTTCCTAAGAGCACAGTGGCCTCCATAATCCTTAAATGGAAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU260444 True 404 lncRNA 0.39 1 6840054 6840457

Neighbor

gene id symbol gene type direction distance location
CI01000053_06829449_06831635 NA coding downstream 8419 6828773 ~ 6831635 (-)
CI01000053_06777287_06806952 NA coding downstream 33102 6777242 ~ 6806952 (-)
CI01000053_06768909_06775364 NA coding downstream 64048 6767972 ~ 6776006 (-)
CI01000053_06662264_06720098 SLC15A4 coding downstream 119392 6661586 ~ 6720662 (-)
CI01000053_06308157_06310323 NA coding downstream 529588 6307318 ~ 6310466 (-)
CI01000053_06881417_06887257 NA coding upstream 40238 6880695 ~ 6887369 (-)
CI01000053_06918860_06919124 NA coding upstream 78161 6918618 ~ 6919124 (-)
CI01000053_06923962_06924261 NA coding upstream 82350 6922807 ~ 6924261 (-)
CI01000053_06950726_06953021 NA coding upstream 110204 6950661 ~ 6953519 (-)
CI01000053_06966828_06990880 NA coding upstream 126143 6966600 ~ 6990953 (-)
G229502 NA non-coding downstream 2750 6837021 ~ 6837304 (-)
G229462 NA non-coding downstream 16631 6822665 ~ 6823423 (-)
G229471 NA non-coding downstream 60422 6779320 ~ 6779632 (-)
G229465 NA non-coding downstream 64968 6774830 ~ 6775086 (-)
G229464 NA non-coding downstream 65228 6774347 ~ 6774826 (-)
G229514 NA non-coding upstream 25791 6866248 ~ 6866596 (-)
G229539 NA non-coding upstream 106954 6947411 ~ 6947666 (-)
G229559 NA non-coding upstream 114977 6955434 ~ 6955679 (-)
G229561 NA non-coding upstream 121272 6961729 ~ 6962066 (-)
G228750 NA other downstream 907813 5931592 ~ 5932241 (-)
G228651 NA other downstream 1052364 5784483 ~ 5787690 (-)
G227604 NA other downstream 2752314 4087237 ~ 4087740 (-)
CI01000053_03551506_03551965 NA other downstream 3287083 3550333 ~ 3552847 (-)
G226963 NA other downstream 3842786 2996717 ~ 2997268 (-)

Expression


Co-expression Network