XLOC_009850 (hibadhb)


Basic Information

Item Value
gene id XLOC_009850
gene name hibadhb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 20871015 ~ 20889516 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019660
GTGTCAATCATCGATTAACCAATGGCGTCACTGTAAGTCGAAGGTCAAGACCGAAGCAGCATGGCCGCTCTGTTAAGGGTCTCGCGGTGTCTGGTAGGAAAGTGTAACAACCATGTCAACGCCGTGCAGGTCTCCATCAGGTCAATGGCTTCTAAAACCCAGGTGGGCTTCATTGGCCTGGGGAACATGGGCAACCCAATGGCAAAGAACCTCATAAAACATGGATATCCAGTGATCGCCACAGATGTATTTCCAGAATCTTGCAAAGAGCTGCAGGAACTCGGAGCTCAGATCCTGGATAGCCCTGCAGATGTAGCAGACAAGGCAGATCGCATCATCACAATGCTTCCCTCCAACCCCAATGTTGTAGATGTGTATACCGGACCAAATGGTATTTTAAAGAAAGTGAAGAAGGGGTCTCTACTCATTGATTCCAGCACTATTGATCCAGCTGTCTCTAAAGAGATGGCAGTTGCAGCAGAGAAACTGGGTGCTGTTTTCATGGATGCCCCGGTGTCTGGAGGTGAGATGGTGAAAACGTACTCTCTGATATGATGGGTAGATGTAGACACAGTAGCTCACGTGTGACTGCACACAAATCAAACATACAAGCAAACACAATGTTACAGTTTTAGTGCCTGATTTATGCGTTCAATAACACACCCATAAATCACACACCCATAGTCTCAGCAAAACTTGTCACCACCTGGGAAGAGGTACAAATTTCTTGAAGAAGTTTTGGCTTCAGTTCAAGCATTGTGGTTTT
>TCONS_00019661
ATCATCGATTAACCAATGGCGTCACTGTAAGTCGAAGGTCAAGACCGAAGCAGCATGGCCGCTCTGTTAAGGGTCTCGCGGTGTCTGGTAGGAAAGTGTAACAACCATGTCAACGCCGTGCAGGTCTCCATCAGGTCAATGGCTTCTAAAACCCAGGTGGGCTTCATTGGCCTGGGGAACATGGGCAACCCAATGGCAAAGAACCTCATAAAACATGGATATCCAGTGATCGCCACAGATGTATTTCCAGAATCTTGCAAAGAGCTGCAGGAACTCGGAGCTCAGATCCTGGATAGCCCTGCAGATGTAGCAGACAAGGCAGATCGCATCATCACAATGCTTCCCTCCAACCCCAATGTTGTAGATGTGTATACCGGACCAAATGGTATTTTAAAGAAAGTGAAGAAGGGGTCTCTACTCATTGATTCCAGCACTATTGATCCAGCTGTCTCTAAAGAGATGGCAGTTGCAGCAGAGAAACTGGGTGCTGTTTTCATGGATGCCCCGGTGTCTGGAGGTGTTGGTGCTGCCACTTCTGGTAAGCTCACTTTTATGGTTGGTGGGCCAGAGGAAGAGTTCAATGCAGCCAAGGAGCTTCTGAGCTGTATGGGTGCTAATGTGGTTTACTGTGGCCAAGTTGGCACTGGACAGGCAGCTAAAATCTGCAACAATATGCTGCTGGCCATTGGGATGATTGGAACAGCAGAGACCATGAACTTGGGAATCAGATTAGGACTTGACCCTAAACTTCTTGCAAAGATTTTGAACATGAGCTCTGGCCGCTGTTGGTCAAGTGACACCTATAATCCTGTCCCAGGTGTGATGGAGGGAGTGCCCTCAGCAAACAACTACCAGGGCGGTTTCGGCACTACACTAATGACCAAGGATCTGGGACTTGCTCAGAATTCAGCAACCAACACGAAAACCCCAGTGCTGTTGGGCTCTGTAGCCCATCAAATTTACCGCATGATGTGTGGACGCGGCTATGCCAACAAAGACTTCTCATCTGTCTTCCAGTTTCTTCGAGAAGAGGAGGGCCAATAGAAGGCAATCCCTTTCTGCCCCTTCCACAGCCTTACCTGCCTTGCACATGACCTGACTCGCAAAACTTTGACCCAACTATGTGATTTCATTGGCATGCATGTGCTGGGagttatgaatgaatgattgactcTATAGACTGGAGTGGGAATAATTGTGTGTTTGTTCTCTTTATGCGTGTCCATAACGTTTGAAGCTGTGAGTTCCTATTGGAATCATGTAACTAAATTGGGCCCACATGTAGAATTAGTAATCCACCGATCAGTTGCTGAGATGCTGTGAATTGACGTTTTTTCTGCCTTCAGAGCTGTTCTAattgaaatgtattattaaatggtCACCAATCACAATCTTGTAAGACTCAGATCAGCTGTTACACTCCTCAATGCTCTGTTAGTAAACAGATTTGCATATGTAAAATATTAGTTTCTACATTTTCAGTCGTAGTTGCGTTTGGCGGATCTTGTTATGTTAATGATGGATCTACATGTAATATTCATGTAAATTTAAACTCTTGGAAATTAAAGTAGGAAATTTCAAGTT
>TCONS_00019662
ACTGTAAGTCGAAGGTCAAGACCGAAGCAGCATGGCCGCTCTGTTAAGGGTCTCGCGGTGTCTGGTAGGAAAGTGTAACAACCATGTCAACGCCGTGCAGGTCTCCATCAGGTCAATGGCTTCTAAAACCCAGGTGGGCTTCATTGGCCTGGGGAACATGGGCAACCCAATGGCAAAGAACCTCATAAAACATGGATATCCAGTGATCGCCACAGATGTATTTCCAGAATCTTGCAAAGAGCTGCAGGAACTCGGAGCTCAGATCCTGGATAGCCCTGCAGATGTAGCAGACAAGGCAGATCGCATCATCACAATGCTTCCCTCCAACCCCAATGTTGTAGATGTGTATACCGGACCAAATGGTATTTTAAAGAAAGTGAAGAAGGGGTCTCTACTCATTGATTCCAGCACTATTGATCCAGCTGTCTCTAAAGAGATGGCAGTTGCAGCAGAGAAACTGGGTGCTGTTTTCATGGATGCCCCGGTGTCTGGAGGTGTTGGTGCTGCCACTTCTGGTAAGCTCACTTTTATGGTTGGTGGGCCAGAGGAAGAGTTCAATGCAGCCAAGGAGCTTCTGAGCTGTATGGGTGCTAATGTGGTTTACTGTGGCCAAGTTGGCACTGGACAGGCAGCTAAAATCTGCAACAATATGCTGCTGGCCATTGGGATGATTGGAACAGCAGAGACCATGAACTTGGGAATCAGATTAGGACTTGACCCTAAACTTCTTGCAAAGATTTTGAACATGAGCTCTGGCCGCTGTTGGTCAAGTGACACCTATAATCCTGTCCCAGGTGTGATGGAGGGAGTGCCCTCAGCAAACAACTACCAGGGCGGTTTCGGCACTACACTAATGACCAAGGTTGTCTTTAATGTATTCATTGCTTTGGAACGTATAACAGTACAGATATTTTTGGCATTTTATGGTGTTTATTAAAGAAGTGTTT
>TCONS_00019663
CAGGTGTATCTTTTGTTTTTAGTAATTCAATGGTAAATTGCCAGTTATTCCTTGCATAATTTCATTTAATCAGCCATATGTGTTTAGGGGTTAGTTTATCTAAAAATTTTAgtttacttaccctcaagtggttctgaACTGGTTTaaagtttctttcatctgttgaacacaaaataagttattttgtaaaatgttagatGCCTTTAACCATTGATGACATTgacacatttttctaaatatcttcttttgtgttcaacgaaagaaagaaactccaacaggtttgtgacacatgaatgagtaaattttcagttttgtgtgaactatccttttaaatgcaaatatattcAAAGTGAACTTCTAAAATTGACACTAAATATATAATGCATGTCTCTTCTTAAGTCTCCATCAGGTCAATGGCTTCTAAAACCCAGGTGGGCTTCATTGGCCTGGGGAACATGGGCAACCCAATGGCAAAGAACCTCATAAAACATGGATATCCAGTGATCGCCACAGATGTATTTCCAGAATCTTGCAAAGAGCTGCAGGAACTCGGAGCTCAGATCCTGGATAGCCCTGCAGATGTAGCAGACAAGGCAGATCGCATCATCACAATGCTTCCCTCCAACCCCAATGTTGTAGATG

Function

symbol description
hibadhb Predicted to enable 3-hydroxyisobutyrate dehydrogenase activity. Predicted to be involved in valine catabolic process. Predicted to act upstream of or within branched-chain amino acid catabolic process. Predicted to be active in mitochondrion. Is expressed in mesenchyme pectoral fin and myoblast. Orthologous to human HIBADH (3-hydroxyisobutyrate dehydrogenase).

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0044091 membrane biogenesis biological_process
GO:0042391 regulation of membrane potential biological_process
GO:0048468 cell development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0022610 biological adhesion biological_process
GO:0072359 circulatory system development biological_process
GO:0007507 heart development biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0030154 cell differentiation biological_process
GO:0006941 striated muscle contraction biological_process
GO:0001765 membrane raft assembly biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0007271 synaptic transmission, cholinergic biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0031579 membrane raft organization biological_process
GO:0070836 caveola assembly biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0060429 epithelium development biological_process
GO:0009083 branched-chain amino acid catabolic process biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048589 developmental growth biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0040007 growth biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0044854 plasma membrane raft assembly biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0008015 blood circulation biological_process
GO:0044857 plasma membrane raft organization biological_process
GO:0071709 membrane assembly biological_process
GO:0003008 system process biological_process
GO:0030029 actin filament-based process biological_process
GO:0003013 circulatory system process biological_process
GO:0003015 heart process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0007155 cell adhesion biological_process
GO:0060047 heart contraction biological_process
GO:0060048 cardiac muscle contraction biological_process
GO:0006574 valine catabolic process biological_process
GO:0042383 sarcolemma cellular_component
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0045121 membrane raft cellular_component
GO:0098857 membrane microdomain cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0005892 acetylcholine-gated channel complex cellular_component
GO:0005901 caveola cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0005912 adherens junction cellular_component
GO:0044853 plasma membrane raft cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0070161 anchoring junction cellular_component
GO:0030054 cell junction cellular_component
GO:0005739 mitochondrion cellular_component
GO:0008442 3-hydroxyisobutyrate dehydrogenase activity molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0022848 acetylcholine-gated cation-selective channel activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050661 NADP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function
GO:1904315 transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function
GO:0005231 excitatory extracellular ligand-gated ion channel activity molecular_function
GO:0098960 postsynaptic neurotransmitter receptor activity molecular_function
GO:0051287 NAD binding molecular_function
GO:0099529 neurotransmitter receptor activity involved in regulation of postsynaptic membrane potential molecular_function
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1582 Predicted to enable 3-hydroxyisobutyrate dehydrogenase activity. Predicted to be involved in valine catabolic process. Predicted to act upstream of or within branched-chain amino acid catabolic process. Predicted to be active in mitochondrion. Is expressed in mesenchyme pectoral fin and myoblast. Orthologous to human HIBADH (3-hydroxyisobutyrate dehydrogenase).

Ensembl:

ensembl_id ENSDARG00000007959

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019660 False 766 lncRNA 0.46 4 20871015 20880205
TCONS_00019661 False 1584 mRNA 0.45 8 20871021 20889516
TCONS_00019662 False 947 lncRNA 0.48 7 20871044 20887424
TCONS_00019663 True 642 lncRNA 0.37 2 20873723 20874500

Neighbor

gene id symbol gene type direction distance location
XLOC_009849 jazf1b coding upstream 70517 20738740 ~ 20800498 (+)
XLOC_009848 NA coding upstream 175498 20684940 ~ 20695517 (+)
XLOC_009847 NA coding upstream 339243 20530125 ~ 20531772 (+)
XLOC_009846 cpvl coding upstream 355209 20496691 ~ 20515806 (+)
XLOC_009845 fkbp14 coding upstream 565911 20294976 ~ 20305104 (+)
XLOC_009851 hoxa13b coding downstream 6388 20895904 ~ 20897836 (+)
XLOC_009852 hoxa11b coding downstream 15238 20904754 ~ 20907378 (+)
XLOC_009853 hoxa10b coding downstream 20670 20910186 ~ 20913003 (+)
XLOC_009854 mir196d coding downstream 23897 20913413 ~ 20913484 (+)
XLOC_009855 hoxa9b coding downstream 25803 20915319 ~ 20917584 (+)
XLOC_009840 CU855688.1 non-coding upstream 1061898 19805021 ~ 19809117 (+)
XLOC_009837 BX005389.4 non-coding upstream 1155805 19686713 ~ 19715210 (+)
XLOC_009859 NA non-coding downstream 251532 21141048 ~ 21142516 (+)
XLOC_009862 NA non-coding downstream 744871 21634387 ~ 21634836 (+)
XLOC_009866 NA non-coding downstream 984879 21874395 ~ 21877421 (+)
XLOC_009868 NA non-coding downstream 1132775 22022291 ~ 22113936 (+)

Expression


Co-expression Network