CI01000054_00390853_00579795 (CSMD3)



Basic Information


Item Value
gene id CI01000054_00390853_00579795
gene name CSMD3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 390853 ~ 579795 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>CI01000054_00390853_00579795.mRNA
ATGAACATAGATGACACAGAGGGGCACAGCGTCAGATCAACGGGATTCCTGACCGTTTTCAAGAGAGGATGTATTAGATGTGGTCCGGTGGACTCCCAAGCAAAGAAAATGGGGATTAAAACTGGAGTTACATTTTGGAATCTGATATTTTTTATGATGGTCACATGCGTGCGAGGTTTCATATATACATGTGGTGGAACATTAAAAGGAAGGAATGGGACCATTGAAAGCCCTGGTTTTCCATACGGATATCAGAACGGGGCAAACTGTACATGGGTTATTGTAGCAGAGGAGGGCAACCGAATTCAAATAGTCTTTCAGTCATTCGCAGTGGAGGAGGACTATGACTTTTTATCCCTCTACGATGGACACCCGCATCCAGCTAACTTCAGGACGAGGTTAACGGGTTTCCAAATCCCTCCTCCCGTCACGAGCACTGGATCTGTATTCTCCCTGAGACTCACCAGTGACTTCGCCGTGAGCGCACACGGCTTTAAAATCTATTATGAAGAATTGCAGAGCAGTTCTTGTGGGAACCCCGGCGTCCCGCCCAAAGGCATCCTGTATGGGACGCGCTTTAATGTAGGCGACAAGATCCGCTACAGCTGTGTAACCGGCTATGTGCTGGACGGCCATCCTCAGCTCACCTGTGTGACCAATGCTGGCAATGCCGCCGTATGGGACTTCCCAGTGCCCATCTGCAGAGCTGAGGACACATGTGGTGATACTCTGAGGGGTTCAAGTGGCATCATTACGAGTCCCAATTTCCCGAGTGAATATTACAATAGTGCGGACTGTACGTGGACCATACTTGCTGATCCCGGAGACACCATCTCCATCATTTTTACAGACTTCCAGACGGAGGAAAAGTACGATTACTTGGAGGTGGAGGGGTCCGAGCCGCCAGCAATATGG

Function


symbol description
csmd3 Predicted to be involved in regulation of dendrite development. Predicted to be located in plasma membrane.

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17495 CSMD; CUB and sushi domain-containing protein

RNA


RNA id representative length rna type GC content exon number start site end site
CI01000054_00390853_00579795.mRNA True 915 mRNA 0.49 5 390853 579795
Loading

Neighbor


gene id symbol gene type direction distance location
CI01000054_00248538_00251489 NA coding upstream 138739 247993 ~ 252114 (+)
CI01000054_00239444_00241646 NA coding upstream 149010 239444 ~ 241843 (+)
CI01000054_00157332_00178926 NA coding upstream 210708 157332 ~ 180145 (+)
CI01000054_00131576_00136719 NA coding upstream 254007 130829 ~ 136846 (+)
CI01000054_00612177_00613764 NA coding downstream 30540 610335 ~ 614879 (+)
CI01000054_00637123_00665809 NA coding downstream 57078 636873 ~ 666129 (+)
CI01000054_00666830_00754317 CSMD3 coding downstream 86597 666392 ~ 754317 (+)
CI01000054_00869317_00877277 RAD21B, RAD21 coding downstream 287331 867126 ~ 878129 (+)
CI01000054_00879731_00882536 MTERF3 coding downstream 299936 879731 ~ 882597 (+)
G229682 NA non-coding upstream 18921 371630 ~ 371932 (+)
G229670 NA non-coding upstream 41966 302855 ~ 348887 (+)
G229638 NA non-coding upstream 203825 184874 ~ 187028 (+)
G229637 NA non-coding upstream 292831 97764 ~ 98022 (+)
G229630 NA non-coding upstream 302471 88152 ~ 88382 (+)
G229717 NA non-coding downstream 280805 860600 ~ 861220 (+)
CI01000054_00916253_00919736 NA non-coding downstream 336321 916116 ~ 919986 (+)
G229736 NA non-coding downstream 338194 917989 ~ 918274 (+)
G229847 NA non-coding downstream 390784 970579 ~ 976960 (+)
G229848 NA non-coding downstream 398908 978703 ~ 981912 (+)
CI01000054_01227110_01229796 EEF1A1L1 other downstream 646540 1226335 ~ 1230329 (+)
G229760 NA other downstream 686555 1266350 ~ 1273750 (+)
G229936 NA other downstream 817285 1397080 ~ 1407130 (+)
CI01000054_01578022_01579167 NA other downstream 998640 1578022 ~ 1579356 (+)
CI01000054_01650242_01665628 PLEKHO1A other downstream 1071165 1650242 ~ 1666115 (+)

Expression


CI01000054_00390853_00579795(CSMD3) Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
End of interactive chart.

CI01000054_00390853_00579795(CSMD3) Expression in each Bioproject

Bar chart with 15 bars.
CI01000054_00390853_00579795(CSMD3) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.

Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015034 csmd3a coding NC_007130.7 CM002903.2 44123618 ~ 44955710 (-)