CI01000054_00612177_00613764


Basic Information

Item Value
gene id CI01000054_00612177_00613764
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 610335 ~ 614879 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_00612177_00613764.mRNA
CTATATATGCTGCTAATAAAATATGTCTTGCACATATTTTGGAATATAGTAAGTAATAAAAAAATGCTGTAATGAAGAAATGTTATTTCAAACATGATTTGATCAGAAGCATAAGTCATAAGTCGCACGGGTATATTTGTAGCAATAGCCAACAATACATTGTATGGGTCAAAATGATAGATTTTTCTTTTATGCCAAAAATCATTTGGATATTAAGAAAGCATCATGTTCCATTAAGATATTTTGTAAATTTCCTACCATAAAAATATCAAAAATGTATTTTTGTGAGTGGATATGCATTGGACATTCATTTGGACAACTTTAAAGGTTATTTTCTCAGTATTTTGATTTTTTTTGCACCCTCAGATTCCAGATATTCAAATAGTTGTATCTTGAACAAATATTGTGCTATCATAACAAACCATACATCAATGGAAAGCTTATTTATTCAGCTTTCAGATGATTTAAAAAAAAAGACTGGTTTTATGGTCCACGGTCACATTTATTTTTCAGCATTTTTTATGCTTTTATTTATTTATACTTTGATATCTTTATTTAACAACATAAGTATAAAAAAAACATGGGATCAACTGGTTTTGTTAAAAAATAAATAAATAAAAATGTGCATGTTACATCATTTCGCCAGTAATGTTGTGCTCACTGAGTGAATTTGTCATTGAATCAGCTAATTCTCTCAGAAAAGAAGCAGTTGAATTCTTTATGAGTGAGTCATTGAATCATTCAAACACTGATTCATTCAGGGACAAACAACATTACTGTGTGTTGCTTGGAGACACCGAGGTTGTTTGACTCCGTTTGGAAATATTTTTGTGGGCAGACCATAAACAGACAAAGTAACTGGAAATGCTGTCTCTGTAATGTAAGTTACCCAATATTAACGTATTGTTTGTTAAACTGCTGTATGGAAACTGTCACACTCGCGCTGTGAACAGAAAAACTGTCTACAAACAGTCGTTATTTTTACAATTCTGTGTGGTGACGGAAGTCGGGCAGAGATTACACACTTTACCTATAAGTTTAACCAAAAGAACCTTATACAGTGTTTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGGAGGGAGGGAAAGTGAGAGAGAGACAGAGACCGAAAGATAACAGTAATGATATGGCTCCGCTCCAGCCTGTGAAGGCCATTAAAGTGTGATTCATGTGGCCATGTCCTTTAATGACATCTCCAGTTAGTCATCAATAAAGTGAGACAGATGTAGGATGAAGATGGAGCATTTTGATGGGTGGAGGGTTGGGGTTAGAATGACCTCTGTCCTCTGTTGAAGCTCCACGCTGATTCACGACACACTGCACGCGTGCACACACACACACAACAATGTTTTTTACTTGTCAACATTTTCAGTATGTGTGCACCGCCCCTCAAAAGTGTCCAGGGAGCGTGCTGGCCGTATCTGGCCCGGCGTGCACTCCATGAGTAATGGTGGACTAAGTGTTAAGGTGCTTGTACTCTGTTAAATGTCCCCAGTGCCATGCCTCAAAATGTCAAAGTATTAGATCAGTGACCTTGGTAGTATATTATGAGCTTTCAGAAAGTTTTATACTTCAGAAGATAAAATATTGACTATCCAAACATCCACTTTTACGGCCTAAACAGACAGATCATTTAAACTCATTTTGACAGTGCTATCTATCCCTGTTCATCTACAAAACGTGAGTTTTGCAGCCCCTTTAGACAGATGCCACGTTCTTATAAATGTTTTTTGTTGAGACGCTCCGTAACAAATGTAAAGAGCTTTCCTTCATGTTTTTACAGGCTATCCGGAATGAATGTCCCATCTCCTATTGTTAGCAACAAGAACTGGCTGAGGTTACACTTTGTTACTGACAGCAACCATCGATACAAAGGCTTCAGTGCCCATTATCAAGGTACTCGCTGCATCGCCAGGGCAAGTGACGGGGTTCAAAAAGCAACATCTGCACTGCGCTTCAGGACACAGCCCGGCAAAATCCAATTTAGGCCACTGATTCATCTGAAAGAGATGCCATCAGAATGGAAGCCCATTCCATTTCGGCCCTCTCCACTCTTATTCACATTAACCAGCTGTTGCTGGTTCAAGATGCCAGTTGATGGCAACGCTCATCTGCAGAAAATAAAGCTGCTATTGGCAGGGCTGTTTGGCTTCAATATACACAGACTTCCCAGGTCTCCATCTGAGAAACTCGACGACCAGTCTAGGAGCTTGTTGCCAGTGAACCAGTAAAAAAAGGATGGATGACGTGTTTAATTATAGTTTTAATGTGACTCCCTACAGCTATCCACCTTATTTTGAAGGTATTTTCTGTGAATGACTTCTGATTCATTAGCTGCTATAGGTAAATGACTAGAAGATTAATATCAAAGTGCAGTAAACTGTAAAACCATTTGCGCTACAAATCAGTGTTTATAATTACTACAATACATTAAAATAATATAATAAGAAAAATACCAGTTTGCAGCATAACGAGCTGTTTTGTACATCTAAAAATAACTGGAAGCGGTTGACACCAGAATTTACAAATGGTGGATACTCCACAAATTATTGTAATAATTGTTTCTGTTATTGACGGGAAGGTTTTCTGAAACAAGATTCATTCATTTAGCATACTTTTTAATTTTTTTATCTAAAGGGACATAGAAATGAGAATAGTGCATATAGTTTTAAGAGAACAGTACAATGATAAAGTAAATGTTTAAAGGGTTAGTTCACCCAAAAATGAAAATTATGTAATTAATTACTCACCCTCATGTTGGTCCACACCCGTAAGACCTTCGTTCATCTTCAGAACACAAATTAAGATATTTTTGATGAAATCCGAGAGGTATATGACTCGTCCATAGACAGCAATATAACCACCATTTTCAAGGTCCAGAAAGGTACTAAAGACATTGTTAAAACAGTCAACATGACTGCAGTGGTTCAACCTTAATGTTATGAAGCAACGAGAATACTTCTCAACGAGAATACTTCTCTTCTCTTCCCTGTCATTATCCATACACAGGTGATATCGGCCGATAAAAGCGCTTATTTTCACTATCGGCCATCAACCAATTGTTGCGTGATTCATTTGAGTCATCTTTTCCTCTTTACTAAAAGTTACAGCACAAAAATGTGCATGAACATCAGAAGGTATGTTGAAAGATACAGTACAACTTACTGAAATGTATCATGTAATCGCTCAATTAATGTTTCATCCGTGGAAAGATGTCAATAAAACAGCTTGTGAACAATATTTCACTTAATGTTGCATTTACCTTAGGACATTTTATCAATGTTCACAGTTTGTTAGTTAGCTATAAAAAAAACACTAGAGAGAAGCTTATTGTATGTATGTTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_00612177_00613764.mRNA True 3395 mRNA 0.37 2 610335 614879

Neighbor

gene id symbol gene type direction distance location
CI01000054_00390853_00579795 CSMD3 coding upstream 30540 390853 ~ 579795 (+)
CI01000054_00248538_00251489 NA coding upstream 358221 247993 ~ 252114 (+)
CI01000054_00239444_00241646 NA coding upstream 368492 239444 ~ 241843 (+)
CI01000054_00157332_00178926 NA coding upstream 430190 157332 ~ 180145 (+)
CI01000054_00131576_00136719 NA coding upstream 473489 130829 ~ 136846 (+)
CI01000054_00637123_00665809 NA coding downstream 21994 636873 ~ 666129 (+)
CI01000054_00666830_00754317 CSMD3 coding downstream 51513 666392 ~ 754317 (+)
CI01000054_00869317_00877277 RAD21B, RAD21 coding downstream 252247 867126 ~ 878129 (+)
CI01000054_00879731_00882536 MTERF3 coding downstream 264852 879731 ~ 882597 (+)
CI01000054_00885259_00886020 NA coding downstream 270380 885259 ~ 886020 (+)
G229682 NA non-coding upstream 238403 371630 ~ 371932 (+)
G229670 NA non-coding upstream 261448 302855 ~ 348887 (+)
G229638 NA non-coding upstream 423307 184874 ~ 187028 (+)
G229637 NA non-coding upstream 512313 97764 ~ 98022 (+)
G229630 NA non-coding upstream 521953 88152 ~ 88382 (+)
G229717 NA non-coding downstream 245721 860600 ~ 861220 (+)
CI01000054_00916253_00919736 NA non-coding downstream 301237 916116 ~ 919986 (+)
G229736 NA non-coding downstream 303110 917989 ~ 918274 (+)
G229847 NA non-coding downstream 355700 970579 ~ 976960 (+)
G229848 NA non-coding downstream 363824 978703 ~ 981912 (+)
CI01000054_01227110_01229796 EEF1A1L1 other downstream 611456 1226335 ~ 1230329 (+)
G229760 NA other downstream 651471 1266350 ~ 1273750 (+)
G229936 NA other downstream 782201 1397080 ~ 1407130 (+)
CI01000054_01578022_01579167 NA other downstream 963556 1578022 ~ 1579356 (+)
CI01000054_01650242_01665628 PLEKHO1A other downstream 1036081 1650242 ~ 1666115 (+)

Expression


Co-expression Network