CI01000054_00637123_00665809


Basic Information

Item Value
gene id CI01000054_00637123_00665809
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 636873 ~ 666129 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_00637123_00665809.mRNA
GAATAAAAAGCTGCTAATGCGATCTGGGATTTAGTCAGTATCTCCACTTTCAATGATGTAGTCACACTCTTACAAAGCGACAACTGCACTGAGACACATTTGTGGGAATGTGTTAATGGTTATCAATTAGATGATTCGAGTGTGTGTGTTGTGTGTTTATGTCTGTGTTTACACGTAAGCTCCACCTCCTCTTCAAATCGCAATGTCTGCAGTTCTGTGAAGCTGTTTGCATGAGGCTTGCATGACCAAAATGAAGTTTATCCGTATGTATGTGTCTAACTGCAAACTGTGCTCTGAATTTGCAGTAAACGAAGGAGGAATCAAACAGGCCTCTAACTCCTGTCCAGACCCGGGGGAACCTGAAAACGGCAAGCGCATTGGCAACGACTTTAGGTTTTTGTGTAACATGGCTTTAGGATTGCACAAAACCCCAGCGAATGCTGCAGAAGCGTTTCATGTTTGTAAGCCGAGGTTTTTACGCACAGGATCGCGCAACGACTGTTTGTTGTTTCCTCAAATGAAAGTACATGAAAGTATTGGTGCCACAGCCCAGTTCACCTGTGATGAAGATCACGTTCTACAGGGTTCCAAGAGCATCACGTGTCAGAGAGTGGCGGAGGTGTTCGCGGCATGGACTGATCATAGGCCTGTCTGTAGAGTGAAAACTTGTGGATCAAATCTTCAAGGTCCGTCAGGGACTTTCACCTCACCGAATTTCCCCATTCAGTATGAGAGCAACTCCCAGTGTGTGTGGATCATCACAGCCAGCAACCTAAACAAGGTGATTCAGATTAACTTTGAGGAGTTTGACCTAGAACTGGGTTATGACACGCTAACCATCGGTGATGGAGGGGAAGTAGGAGACCCCAAAACCATCTTACAAGTTCTGACGGGCAGCTTTGTTCCCGACCTCATTGTTAGCATGACCCATCAGATGTGGCTTCACCTCCAGTCTGATGAAAGTGTGGGATCTATAGGCTTCAAGATCAACTACAAAGAAATCGACAAGGAGAGCTGTGGGGACCCAGGCACCCCTCTGTATGGAATGAGAGAAGGAGATGGGTTCTCAAATGGTGACGTGCTACGCTTTGAGTGCCAGTTTGGATTTGAGCTCATTGGAGAGAAAACAATATCCTGTCAGAACAACAACCAGTGGTCTGCCAACATCCCCATCTGCATTTCAGTTTTATACTGTAGCATTTTCAGCGTTTATCAGGACGACTATGCTAAATAAGTTTGAATTTACTTCAGCATTAATTTGAATGTAGTATATAATTTAACAGCTGGAATGACGGCTACATTCGTTTAGTGTTTGCGTGCGTCTCGAAAGTTATAAATAAAGCCACAAAAGTTCATGGAGCGAACTTTTCAATCATTTAGATGGATGATGCATGGGAAACTCTGACCAATAAGAGGACAGTTGTACACGCATGTGAATTGCATTAACACATTTTGGTACACTTTGACCTTGTGAAAGCGAACCAAACCAAGAAGAAAATGCAACATTGTAACAAATTAAGTCCCTGTTGTGTGTGAAAACGCCTTAAGGTGCTA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_00637123_00665809.mRNA True 1554 mRNA 0.44 8 636873 666129

Neighbor

gene id symbol gene type direction distance location
CI01000054_00612177_00613764 NA coding upstream 21994 610335 ~ 614879 (+)
CI01000054_00390853_00579795 CSMD3 coding upstream 57078 390853 ~ 579795 (+)
CI01000054_00248538_00251489 NA coding upstream 384759 247993 ~ 252114 (+)
CI01000054_00239444_00241646 NA coding upstream 395030 239444 ~ 241843 (+)
CI01000054_00157332_00178926 NA coding upstream 456728 157332 ~ 180145 (+)
CI01000054_00666830_00754317 CSMD3 coding downstream 263 666392 ~ 754317 (+)
CI01000054_00869317_00877277 RAD21B, RAD21 coding downstream 200997 867126 ~ 878129 (+)
CI01000054_00879731_00882536 MTERF3 coding downstream 213602 879731 ~ 882597 (+)
CI01000054_00885259_00886020 NA coding downstream 219130 885259 ~ 886020 (+)
CI01000054_00916253_00919736 NA coding downstream 250124 916116 ~ 919986 (+)
G229682 NA non-coding upstream 264941 371630 ~ 371932 (+)
G229670 NA non-coding upstream 287986 302855 ~ 348887 (+)
G229638 NA non-coding upstream 449845 184874 ~ 187028 (+)
G229637 NA non-coding upstream 538851 97764 ~ 98022 (+)
G229630 NA non-coding upstream 548491 88152 ~ 88382 (+)
G229717 NA non-coding downstream 194471 860600 ~ 861220 (+)
G229736 NA non-coding downstream 251860 917989 ~ 918274 (+)
G229847 NA non-coding downstream 304450 970579 ~ 976960 (+)
G229848 NA non-coding downstream 312574 978703 ~ 981912 (+)
CI01000054_01227110_01229796 EEF1A1L1 other downstream 560206 1226335 ~ 1230329 (+)
G229760 NA other downstream 600221 1266350 ~ 1273750 (+)
G229936 NA other downstream 730951 1397080 ~ 1407130 (+)
CI01000054_01578022_01579167 NA other downstream 912306 1578022 ~ 1579356 (+)
CI01000054_01650242_01665628 PLEKHO1A other downstream 984831 1650242 ~ 1666115 (+)

Expression


Co-expression Network