CI01000054_00916253_00919736


Basic Information

Item Value
gene id CI01000054_00916253_00919736
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 916116 ~ 919986 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_00916253_00919736.mRNA
ATGGACACAATGGGAATCAGGCTCCTGGACAAAGACAGGATGGAGGAGATCTGGCGGACCCAACAGCACCACGTTGAATGTATCCAGGACCCACCAGCTTTACAGAAAGGTACAAGTGCCAGTGACCTGCACTTCCAGATGTACCTGCTGGAAGGCCTTGTGCAGTGGGATGAGGCTTGTGCAGTTCCTGCCGTTGAAGGTGGCAGCAGAAAGGATGTCTGCTATGGTGGCCAACTGCAGCAGTATGCCAACACACTGAGCCAGCAATTTTTGGGCCTTAATTTGGCGGAGGATTACACCAGCCCTGGCGGATACACAGGTGAACTCATTGGTGTGGAGTACATGTATTCCCAAACAAATAAACCTTTTGAGGAAGACTTTGGTGCTGATCCTGATATTCCAGATGGGATTCAGGATGAAGACCTGGAGAGTGATCTGGAGGGGGATGAGGAGTTTGAGGATTTGGACTTCGATGGTGAGCCCCTCGAAATTATGGAGCTCAGCTTCAATCCCCCAGAACCCATTCAGCAGCGGACAGCAGCCATACAACCTCCTGGTCGGACAGATACAGCAGGGTCTTCATTGCCTGAGCAAGTGAAAGCTCCACACTCACACCTTAACAAGCTGGAACACAAATCAGGAGGCACTCCTAAACATGAAGTGGATAGTGGGAGGAGCAACAGGAAAGCACAAACAGAGAGCACTACAGCTACACCAGCAATACAAAAAACATACGTCCCTATGGACGTTACAAAGTTATGTGAATTAATTGCTCCCCTTCTTAAGATGTGTGGATGTCTCCTGTGTGCGTGTTTGCTTGATCCTCTTCATCGTCAGAAGACTCTCATCATGATCAGGAAGATCTTGCTTGATGTAGTTACAAAAGAAAAACACAAGCCAAGGAAAACGACGCACATTTGTCAGACAAGCTATATACATGATGTAGAGCGAGACGCTCTGAGCGACGCTCCACTGCAGTGCTGCGCTCTAGCGTTCTGGCTGCGTACTGCACCCTAAAATCAGGTTTATCACTCTGTACAGTATAAAATATGAAAAAGTACAGTGAAATCATAAATAATAACACAAAAAATCTATAAGGAACGCTTCACGAATTTGCGTGTCATCCTTGCGCAGGGGCCATGCTAATCTTCTCTGTATCGTTCCAATTTTAGTATATGTGCTGCCGAAGCGAGCACGAACTGAGAGATTGGAGGACAGCTATTTATACCCAGCACCCCCAGGTATGTATTTCAGTGGTGGTAAGTGA
>TU260696
CTTTGAGTGGGATTCTGGGGATGTTAAGAAGCTGAAGGAGGACTGCGGCTGCAATCCCACCACTAAAGAGCTGGCAAAGCACTGTCGTCGCCGCACTCGTGGAGATTGAACAGCTCCTTAAGGACTTTAGTGAAGCAATGGACACAATGGGAATCAGGCTCCTGGACAAAGACAGGATGGAGGAGATCTGGCGGACCCAACAGCACCACGTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_00916253_00919736.mRNA False 1267 mRNA 0.47 7 916253 919986
TU260696 True 214 lncRNA 0.53 1 916116 916329

Neighbor

gene id symbol gene type direction distance location
CI01000054_00885259_00886020 NA coding upstream 30233 885259 ~ 886020 (+)
CI01000054_00879731_00882536 MTERF3 coding upstream 33656 879731 ~ 882597 (+)
CI01000054_00869317_00877277 RAD21B, RAD21 coding upstream 38124 867126 ~ 878129 (+)
CI01000054_00666830_00754317 CSMD3 coding upstream 161936 666392 ~ 754317 (+)
CI01000054_00637123_00665809 NA coding upstream 250124 636873 ~ 666129 (+)
CI01000054_00992036_01004247 NA coding downstream 72050 992036 ~ 1004392 (+)
CI01000054_01007770_01028369 MATN1, SESN2 coding downstream 87666 1007652 ~ 1028832 (+)
CI01000054_01042925_01056338 NA coding downstream 122905 1042891 ~ 1056561 (+)
CI01000054_01087465_01101501 AHDC1, METTL24 coding downstream 166946 1086932 ~ 1101774 (+)
CI01000054_01103702_01106852 NA coding downstream 183455 1103441 ~ 1106852 (+)
G229717 NA non-coding upstream 55033 860600 ~ 861220 (+)
G229682 NA non-coding upstream 544321 371630 ~ 371932 (+)
G229670 NA non-coding upstream 567366 302855 ~ 348887 (+)
G229638 NA non-coding upstream 729225 184874 ~ 187028 (+)
G229637 NA non-coding upstream 818231 97764 ~ 98022 (+)
G229847 NA non-coding downstream 50593 970579 ~ 976960 (+)
G229848 NA non-coding downstream 58717 978703 ~ 981912 (+)
G229849 NA non-coding downstream 63614 983600 ~ 985153 (+)
G229864 NA non-coding downstream 90735 1010721 ~ 1011128 (+)
G229865 NA non-coding downstream 93189 1013175 ~ 1013401 (+)
CI01000054_01227110_01229796 EEF1A1L1 other downstream 306349 1226335 ~ 1230329 (+)
G229760 NA other downstream 346364 1266350 ~ 1273750 (+)
G229936 NA other downstream 477094 1397080 ~ 1407130 (+)
CI01000054_01578022_01579167 NA other downstream 658449 1578022 ~ 1579356 (+)
CI01000054_01650242_01665628 PLEKHO1A other downstream 730974 1650242 ~ 1666115 (+)
G229736 NA non-coding downstream 1660 917989 ~ 918274 (+)

Expression


Co-expression Network