CI01000054_00992036_01004247


Basic Information

Item Value
gene id CI01000054_00992036_01004247
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 992036 ~ 1004392 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_00992036_01004247.mRNA
ATGTAGTGAGAAACTTGCAGGGAGGATTCATGTGTTTGGTACTGAGTGTTTCAGCTCGTTTGTCACATTGTGAAAGAGTCGAAGAGAAAGATGTCTGGAACACGTACACTCTGCTGCCATGTCAACACGGCGACCCTCTCGTTTGCCATCTTATACCTGACCAGAGGTCCAGCAATCAAAAGTCTATTCTGAGTATTACAATAGATATCAAAAGGCTGGAGCGCAAAAATAGCAGAGAGCAAGAAGTCAGAAGCAGAAGAAGTGAGGCTAACACAGACCGAGTTGACATCAGCACTAATGTTCTGATGCTGTTCATGATGTCGATCTCTGCTGTGCTGGCTCTTTTCTCTCGACGCAAGGGCCCGATGTTTGTGCTGCCGTTTGTGCTGATGATGTTCGTGGAGTTGAGTCTGAGTTTTCTCTGGCTGTGTGATGGAGCCTGGATTCTGCCAGGGATCCCCACATACAAAGAAGTGCTGCAGGCTGTAAAGAGACAGAAAGGAGTCAGTATGTTGAATGAGGAGGACATTGGCCAGTACGCCATGTTGTACAGTGTGGCCTTTATGGTGGACGTACTGCTGAAGGTGTATATGCTTCAGGTGTCAATGAGGTGTTTCTACGCCCTAAAGGAAAAAAGGCTTGCTGCCATCCATGTTGACACTGGAAATACGGTGACAGTGAAGCTGCCTTCTTATGATGAAGCTCTCAAAATGAAAGCAGAAGACACACCCCCGAACTATAATGAGCCTTAAAATGAAATGAATACGTATTTCCGGCATGCTTTTATGACGCAAACGAAAACAAAAAACCACAAGCACAAATATTCACATGCATGCTAAAAAACCAGAAGCAACACATAAACAGACATGCCTATGCTTACATCCTTGCTTTGGCACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_00992036_01004247.mRNA True 897 mRNA 0.45 8 992036 1004392

Neighbor

gene id symbol gene type direction distance location
CI01000054_00916253_00919736 NA coding upstream 72050 916116 ~ 919986 (+)
CI01000054_00885259_00886020 NA coding upstream 106016 885259 ~ 886020 (+)
CI01000054_00879731_00882536 MTERF3 coding upstream 109439 879731 ~ 882597 (+)
CI01000054_00869317_00877277 RAD21B, RAD21 coding upstream 113907 867126 ~ 878129 (+)
CI01000054_00666830_00754317 CSMD3 coding upstream 237719 666392 ~ 754317 (+)
CI01000054_01007770_01028369 MATN1, SESN2 coding downstream 3260 1007652 ~ 1028832 (+)
CI01000054_01042925_01056338 NA coding downstream 38499 1042891 ~ 1056561 (+)
CI01000054_01087465_01101501 AHDC1, METTL24 coding downstream 82540 1086932 ~ 1101774 (+)
CI01000054_01103702_01106852 NA coding downstream 99049 1103441 ~ 1106852 (+)
CI01000054_01122882_01126143 NA coding downstream 118490 1122882 ~ 1126784 (+)
G229849 NA non-coding upstream 6883 983600 ~ 985153 (+)
G229848 NA non-coding upstream 10124 978703 ~ 981912 (+)
G229847 NA non-coding upstream 15076 970579 ~ 976960 (+)
G229736 NA non-coding upstream 73762 917989 ~ 918274 (+)
G229864 NA non-coding downstream 6329 1010721 ~ 1011128 (+)
G229865 NA non-coding downstream 8783 1013175 ~ 1013401 (+)
G229872 NA non-coding downstream 53616 1058008 ~ 1059151 (+)
G229883 NA non-coding downstream 117700 1122092 ~ 1122351 (+)
G229806 NA non-coding downstream 139741 1144133 ~ 1144557 (+)
CI01000054_01227110_01229796 EEF1A1L1 other downstream 221943 1226335 ~ 1230329 (+)
G229760 NA other downstream 261958 1266350 ~ 1273750 (+)
G229936 NA other downstream 392688 1397080 ~ 1407130 (+)
CI01000054_01578022_01579167 NA other downstream 574043 1578022 ~ 1579356 (+)
CI01000054_01650242_01665628 PLEKHO1A other downstream 646568 1650242 ~ 1666115 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014284 laptm5 coding NC_007130.7 CM002903.2 43297546 ~ 43309596 (+)