CI01000054_01007770_01028369 (MATN1, SESN2)


Basic Information

Item Value
gene id CI01000054_01007770_01028369
gene name MATN1, SESN2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 1007652 ~ 1028832 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_01007770_01028369.mRNA
GCATAAATTCCTGCGTGTGTGAGATTAATTTGAGAGGAAAAGTGCCCAGAAAAGACAGATTCATCCTAATGTTTATTTGAGTTCAACCCCAAGTTAGAGACCCCTCCTAGGGCTCCAAATGAACTCGGTTTCCCTTATGCAAACACATACACAGATCAAGCTCGTACACCTCGGGGGAGATGGATTTGAGGGCGGCGTCTCGAAGCTCTGTCTCTGGTTGTCGAGCAGGTCATTAGGACTCACGCCGCATTACAGTATGACGTTGCCGGGGTTTGTGATGCTGCTATGCATCCTGGGAGCTCAAGCCACCGTGGATCTGAGAAATGCTGCTGCTATGGCTGCAGGCTTGTGTAACACCAAGCCCACTGATGTAGTGTTCATCATCGACAGCTCTCGAAGTGTCCGCCCTGCTGAGTTTGAGCAGGTCAAGGTCTTCCTGGCCAAAGTGATTGACGGCTTGACCGTCGGACCTGATGCTACTCGCGTGGGCGTCGTGAACTATGCCAGTCGGGTGAAGAACGAGGTCTCACTGAAGTCCCACAAAACCAAGGCTGCGCTTGTCAAGGCTGTGTCCAAGATAGAGCCACTGTCCACCGGTACCATGACAGGCCTCGCCATCCAGTTCGCCATGAACGTGGCCTTCAGCGAAGCCGAGGGAGCACGAAAATCCCCAGGCATCAGCAAGGTGGCAATTATTGTGACTGACGGCAGACCGCAGGACAACATCCGTGACAATGCAGCAAGGGCGCGTGAGGCCGGCATTGAGATATTCGCCATCGGAGTGGGCCGCGTAGACATGACCACGCTCAGGCAAATGGCCAGCGAGCCTCTGGAGGATCACGTGGACTACGTGGAGAGCTACAGCCTCATTGAGAAGCTCACCAAGAAGTTCCAGGAGGCCTTCTGTGACGTTGTGTCGGACCTATGTGCGACAGGCGATCATGACTGTGAGCACATTTGCATCAGCACACCCGGATCTTTCAAGTGCGCCTGCAGAGAGGGCCATACACTCATGAACGACAGCCGATCTTGCAGTGCTTGCAGTAACGCAGCCACAGATGTGGTCTTCTTGATCGACGGGTCCAAGAGTGTGAGACCAGAGAACTTTGAGCTGGTCAAGAAATGGATCAACCTGATCATCGACAAACTGGACGTGTCAGAAACCAACACCCATGTGGGACTGGTGCAGTATTCCAGCTCTGTGAAGCAGGAGTTCCCTCTGGGACGCTACAACAACAAAAAAGCCCTGAAAGATGCTGTGAAAAAGATGGACTATATGGAGAGGGGAACCATGACTGGCCAGGCCATCAATTTCATAGTGGAAAACAGCTTCACTCCTAACCAGGGCGCCAGACCTGGAGTGGCAAAGATCGGTATTGTCTTCACTGATGGCAGGTCGCAAGACGACATTGTAGGTGCCACCAGGAAGGCCAAGGAGCACGGCTTTAAGATGTATGCTGTGGGCGTTGGTAATGCTGTTGAGGACGAGCTGAGAGAGATTGCATCTGAACCTGTCCCTGACCATTACTTCTACACAGCTGACTTCAAAACCATGAACCAAATTGCCAAGAAGCTGCAAATCAATGTTTGTCAAGTGCTTAAGATCCACTCCATTTCTTTCTGCTACTCTGCCTTCATCACTATTGTCCATGGGGATGGAGCACTGATTGTCATGGTGAGCATGGTTTACCTGACCACACCTGCTCTGGATTATGGTCACCATAAAAGCAGAAGGTCTGGAGACGGTAGCTCTGATCTCCGTTACCGGCGGGTTGCGTCATGCTGCGCCGCAGAGGTGATGCAAGAGTCCGGCGCTGTGTGTTCACGTACGCCACGCCTCCTCCCGGTGCTGTTTCCTGCTTTCCACAAACTAGACTCCTACAGGCGCAATGAAGTCATAGAGCACAAACCCTCCAAGACTCTTCATCATCATTATTCTGTTAAACCTGTGACTTCTGAACACCTATTTTCCTCCGATGAAGACAACAAAGAGCCTTTATATTTTCTACATCTCTATTGTCTCTCTTTTTCTCAGGAGGAAGCAGGAGTTGACGTACCCCAGGCGTTGCCCTCTGGGCCCAGTGCCTTTATCCCAATTGAAGTGATTCTGGAGGAAGGGGCCGCACAGGAGGTGATGTCAGAGGCTCCGTTGTCAGAAGGACGTGCCGATCATATCATCATGGTGATGGGGCTGCATCCCACCTACTTAACCTGTTTCCTGCGCACCCAGCATGCTTTGCTCCAGCTGGATGGCCCTCTGCCTTTGTCATGGAGACATTTTATAATCATCTTGGCGTCTGCACGTCACCAGTGCTCATATTTAGTGCAGCACCACAGCTCTGCTTTTCTGCTGGCTGGTGGAGACGAGTCCTGGCTTAGAGGTCTTGACTGTGCACCACCTAAAATACAGCACCTGCAGACGCTCAACAAACTGCTCGCACACAGACCCTGGATCATCACCCAGGAACATATACAGGAGTTGGTGTGTCCTGGTGCAGAGGCTCGATGGTCCCTGGCAGAACTGATTCAGGCGGTTGTTTTGATGAGCCATGCGCACTCTCTGGCCTCGTTCGTTTGGGGTTGTGGCATTCTCCCAGAGCCTGAGCAGTCAGGAGATCCGTCGCTCCAACCGTGTTCGCCCACAGAGTCCTGTTGTTCCGCCCGAGACAAGGCCAGAAATCAGCAAGAGTGGTCTGAGGCTGTGAACGAGGTTAAGCTTTTGATGGAGAAGATGATGATGGTTCAGCAGCAAGGTGAAGAGTTCACTCAGGAAGAGATGGTTACTCGCTTTGAAAGAGAAAGGACAGAGACTTTGCTGGAACCTGTTGAAGTTCAGCAGTCTGTTCTTCCTGATTGTGTCTCGCGGTTCGTCGCGGAGGCAGATTTTACTTACCAGGATTTTAGTCCTAGAGGAGTGCAGGCCCCTCCAACCATGAGAGCTCAGGACTATTCATGGGAAGATCACGGCTTCTCTCTGATGAACAGGCTGTATGGGGAGATGGCACAGCTTCTGGATGAGAAATTTCAGGTGGTGTGTGCGCTCACGTATAACACCATGGCCATGCACTCGCACGTGGACACCTCCACACTCCGCAAAGCCATCTGGAATTACATCCACTGTATCTACGGCATCAGGTATGATGATTACAATTATGGGGAGGTCAACCAGCTGTTGGAGCGCAGTTTAAAAGTGTATGTCAAGACAGTGGCTTGTCACCCAGAGAAAACCACACCAAGAATGTACTTCTCTTTTTGGAGGCAGTTTCGACACTCAGAAAAGGTCCATGTGAACCTGTTACTAATGGAGGCGCGACTGCAGGCAGCTTTACTTTATGCTCTCAGAGCAATTACACGCTACATGACCTAATGCGCCCAAGCTTTTCCAAAGAGCATTAAACAAGGGATGACCTGTATATACAAATATGCTCCGATTGTAGCGTGTGTTGGCACACAAATTGCACACAATCACACTTTAAAGCACAAAGGCTCAAGAGTTTTTTGTGTTATTTTCTCTATTCTTTTCAATATTTTTGGCTTCTATGGGCTGGTTGATCATCTGCTACTGGATCATAATTGGATTTAGGAGGCAGCGAATTTTGCACATGTCCTTTGAGTAAATTGCCTCGTTGTGGTCTTTTTCCTTATACTGTGAATGTGTCTTTGCCCTGCTGCAGTATTCTTTGCGTGTGCGTTTTGATGAATATTTATGTAAGTTTGACACTAAGAACTGCCTATTCCTCTCTAAGATTGAGAGCCGATTTAAAGTGAGCAAAACTGGATGAAAAAAGCACACTTTGTTTGTTGGTGTTATTTGTGCATTTTTATGTGTA

Function

symbol description
matn1 Predicted to enable calcium ion binding activity. Predicted to be an extracellular matrix structural constituent. Acts upstream of or within cartilage development. Predicted to be active in collagen-containing extracellular matrix. Is expressed in several structures, including cartilage element; head; integument; notochord; and pectoral fin. Orthologous to human MATN1 (matrilin 1).
sesn2 Predicted to enable leucine binding activity and oxidoreductase activity, acting on peroxide as acceptor. Predicted to be involved in several processes, including cellular response to leucine; cellular response to leucine starvation; and negative regulation of TORC1 signaling. Predicted to act upstream of or within regulation of response to reactive oxygen species. Predicted to be located in cytoplasm and nucleus. Orthologous to human SESN2 (sestrin 2).

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
K20394 SESN2; sestrin 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_01007770_01028369.mRNA True 3830 mRNA 0.50 19 1007652 1028832

Neighbor

gene id symbol gene type direction distance location
CI01000054_00992036_01004247 NA coding upstream 3260 992036 ~ 1004392 (+)
CI01000054_00916253_00919736 NA coding upstream 87666 916116 ~ 919986 (+)
CI01000054_00885259_00886020 NA coding upstream 121632 885259 ~ 886020 (+)
CI01000054_00879731_00882536 MTERF3 coding upstream 125055 879731 ~ 882597 (+)
CI01000054_00869317_00877277 RAD21B, RAD21 coding upstream 129523 867126 ~ 878129 (+)
CI01000054_01042925_01056338 NA coding downstream 14059 1042891 ~ 1056561 (+)
CI01000054_01087465_01101501 AHDC1, METTL24 coding downstream 58100 1086932 ~ 1101774 (+)
CI01000054_01103702_01106852 NA coding downstream 74609 1103441 ~ 1106852 (+)
CI01000054_01122882_01126143 NA coding downstream 94050 1122882 ~ 1126784 (+)
CI01000054_01133011_01143370 NA coding downstream 104179 1133011 ~ 1143612 (+)
G229849 NA non-coding upstream 22499 983600 ~ 985153 (+)
G229848 NA non-coding upstream 25740 978703 ~ 981912 (+)
G229847 NA non-coding upstream 30692 970579 ~ 976960 (+)
G229736 NA non-coding upstream 89378 917989 ~ 918274 (+)
G229872 NA non-coding downstream 29176 1058008 ~ 1059151 (+)
G229883 NA non-coding downstream 93260 1122092 ~ 1122351 (+)
G229806 NA non-coding downstream 115301 1144133 ~ 1144557 (+)
G229770 NA non-coding downstream 117458 1146290 ~ 1151146 (+)
G229831 NA non-coding downstream 132370 1161202 ~ 1161520 (+)
CI01000054_01227110_01229796 EEF1A1L1 other downstream 197503 1226335 ~ 1230329 (+)
G229760 NA other downstream 237518 1266350 ~ 1273750 (+)
G229936 NA other downstream 368248 1397080 ~ 1407130 (+)
CI01000054_01578022_01579167 NA other downstream 549603 1578022 ~ 1579356 (+)
CI01000054_01650242_01665628 PLEKHO1A other downstream 622128 1650242 ~ 1666115 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00010984 NA coding CM030133.1 CM030133.1 6475982 ~ 6509923 (-)