CI01000054_01042925_01056338


Basic Information

Item Value
gene id CI01000054_01042925_01056338
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 1042891 ~ 1056561 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_01042925_01056338.mRNA
CCTTAAAAACAAAGGTCATTGCATTAGATATCAAATGACTTACCAGATACCACTGTATCAAATTAATTCCTCTTTGTCTTGTTTCTATGGGAAGAAACTCTGTTTCCAGGGTGATGAGCTGTGTGCTTTAAAAATATCGAATATTATGGGCTGTGCTTGCTGTAAGCAGAGGAAGGCCAGTAAAGCTGTGTCGAATCCCAACTCGTGTGACTCAGGCAATGGGACCCAGGCATCAGATCCCTCCCGATACATCCCCGATCCAACTTTTAACCCCGGGACGGGGATGATCCCGAACTTTAATGATTTTTCAAACCTAATGCCTGCTCCCTCGTCCCGCCCAGCTGCCATCACAGGAGGAGGCGTAACGCTCTTTATAGCCCTCTATGACTATGATGCCCGTACAGAGGATGACCTCAGTTTTCAGAAAGGAGAAAAGTTCCATATTATCAACAACACCGAGGGTGACTGGTGGGAGGCTCGCTCACTGGACACAGGAAAGTCTGGGTACATTCCCAGCAATTATGTGGCCCCCGTGGACTCCATACAAGCTGAGGAGTGGTATTTTGGAAAGATGGGCCGGAAGGATGCCGAACGACAGTTGTTGGCACAAAATAACCCTAGAGGGACATTCTTAATACGTGAGAGCGAGACAACAAAAGGAGCATACTCTTTGTCCATCAGAGACTGGGATGATGCGAAGGGCGATCATGTCAAGCACTATAAGATTAGGAAGCTTGACAATGGCGGTTATTACATCACAACAAGGACACAGTTTGATACCGTCCAGCAGCTGGTGGAGCACTATACAGAGCGTGCAGCAGGGCTGTGCTGCCGTTTGATTGGCAGCTGTAGGCGGGGCATGCCTAAGCTGGCTGACCTGTCAGTGAAGACTAAGGATGTTTGGGAGATTCCCAGGGAGTCACTTCAGCTCATTAAGAAACTGGGCAATGGCCAGTTTGGTGAAGTGTGGATGGGTAGTAATGATGGGTTATGTTGCTACTTGACTAAACCCTGTCCAAATGCCACGCCCCAAACATTGGGTTTAGGGCGGGACGCCTGGGAGATCGCCCGGGAAACGCTGCAGCTCAACAGGAAGTTGGGTCAGGGTTGTTTTGGCGACGTCTGGATGGATGCCTCTACATCTGTTTCTCCCTTCCCCTTCTCTCATCCCCTAAACATTGCCATGTCCGAACGGTTCTTCAGACTGTGTCTGACACCATTTCTGTGTGTAGGCATGTGGAATGGCACAACTAAAGTTGCAGTCAAAACCTTGAAGCCAGGCACCATGTCTCCGGAGGCCTTCCTGGACGAGGCCCAGATCATGAAGAGGCTCCGGCATGATAAACTTGTACAGCTGTATGCTGTGGTGTCTGAGGAGCCCATCTACATCATCACTGAGTTCATGACTCAAGGAAGCTTGTTGGACTTTTTGAAAGATGGAGATGGCAGAAATTTAAAATTGCCTCAACTCGTGGACATGGCGGCCCAGATCGCTGCAGGCATGGCCTATATTGAGCGGATGAACTACATCCACAGAGACCTGCGAGCTGCCAATATCCTGGTTGGAGACGGTCTGGTCTGTAAGATTGCAGACTTTGGACTGGCTAGACTCATTGAGGACAATGAGTACACAGCTAGACAAGGAGCAAAGTTTCCGATAAAGTGGACCGCCCCAGAGGCTGCTCTTTATGGTAAATTTACCATCAAATCAGATGTGTGGTCTTTTGGTATCCTGTTGACTGAGCTCATCACCAAGGGCAGAGTGCCTTACCCAGGGATGAACAACAGAGAGGTGCTGGAACAGGTGGAGCGTGGGTATCGAATGCCGGTTCCCCAGGGCTGCCCAGCGTCTCTGCACGAGCTGATGCTGCAGTGCTGGAGGAAGGATCCGGACGAGAGGCACACCTTTGAGTACCTGCAGAGCTTCCTGGAGGACTACTTTACTGCTACTGAACCCCAGTACCAGCCTGGAGAGAACCTGTGATAGACGCATATGCTCTTAAGTGCATTAGTTCAATATATCCTTCAGGAAAGATGCGATTGCCTTTACTTTCTATCACAATACCTCCATAAACTGATCCATGGATCCTCAATCACAGGCTCTGAACATGCTTTAGTGCAATTTCTGATCTTGTGCTTTAGCTTGAGAGTTTCAAACTGAAAATGCTTTCCAAGATACTGCAAGATTGGGTCACTTTTTTGAAGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_01042925_01056338.mRNA True 2207 mRNA 0.49 12 1042891 1056561

Neighbor

gene id symbol gene type direction distance location
CI01000054_01007770_01028369 MATN1, SESN2 coding upstream 14059 1007652 ~ 1028832 (+)
CI01000054_00992036_01004247 NA coding upstream 38499 992036 ~ 1004392 (+)
CI01000054_00916253_00919736 NA coding upstream 122905 916116 ~ 919986 (+)
CI01000054_00885259_00886020 NA coding upstream 156871 885259 ~ 886020 (+)
CI01000054_00879731_00882536 MTERF3 coding upstream 160294 879731 ~ 882597 (+)
CI01000054_01087465_01101501 AHDC1, METTL24 coding downstream 30371 1086932 ~ 1101774 (+)
CI01000054_01103702_01106852 NA coding downstream 46880 1103441 ~ 1106852 (+)
CI01000054_01122882_01126143 NA coding downstream 66321 1122882 ~ 1126784 (+)
CI01000054_01133011_01143370 NA coding downstream 76450 1133011 ~ 1143612 (+)
CI01000054_01173734_01187846 KIAA0319L coding downstream 117173 1173734 ~ 1188947 (+)
G229865 NA non-coding upstream 29490 1013175 ~ 1013401 (+)
G229864 NA non-coding upstream 31763 1010721 ~ 1011128 (+)
G229849 NA non-coding upstream 57738 983600 ~ 985153 (+)
G229848 NA non-coding upstream 60979 978703 ~ 981912 (+)
G229847 NA non-coding upstream 65931 970579 ~ 976960 (+)
G229872 NA non-coding downstream 1447 1058008 ~ 1059151 (+)
G229883 NA non-coding downstream 65531 1122092 ~ 1122351 (+)
G229806 NA non-coding downstream 87572 1144133 ~ 1144557 (+)
G229770 NA non-coding downstream 89729 1146290 ~ 1151146 (+)
G229831 NA non-coding downstream 104641 1161202 ~ 1161520 (+)
CI01000054_01227110_01229796 EEF1A1L1 other downstream 169774 1226335 ~ 1230329 (+)
G229760 NA other downstream 209789 1266350 ~ 1273750 (+)
G229936 NA other downstream 340519 1397080 ~ 1407130 (+)
CI01000054_01578022_01579167 NA other downstream 521874 1578022 ~ 1579356 (+)
CI01000054_01650242_01665628 PLEKHO1A other downstream 594399 1650242 ~ 1666115 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location