CI01000054_01122882_01126143


Basic Information

Item Value
gene id CI01000054_01122882_01126143
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 1122882 ~ 1126784 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_01122882_01126143.mRNA
GTGGAATTACTGTCGATTTTTTGAGGATGAGGTGTGTGGTGGCCGCACTCTGTGGGATTCTACTTCTAACGCAGGTTATTATAACCAATTCACAAGAATCAGCTTACATCTTTTATCTCTTGATGGATTGACAGATGATTCAGCCATCGTGAACTGTTCTCAGTTTGACTCGTGTGATGGCTGCATAAGCGGCGACCCGGCCCTCAACCTGACACGATGTGTCTGGCAAAGCTGTAATGACGGAAATGACACGAGATGCATGTCTGACATTGAAGACTCTGGAGGCTGTTCTGTCTACAATGTGACCGGCATGTGCCAAAGTGAGCAAAAAACTGATAATCACAACATTTGCAAATGGAAGTTTTATATAAGGAGTGTGTTTGATATGTATGTTTTGTATATTATAGCAGATGGCGGGTCTGCTGATGGCGGTGGCAAAGATAACACGAGCTCCGAGTTCTCTCAAGCATCATTTGACCTGTCTAGCTTCATTGGGGGAATCATCCTGGTGTTGGTGTTGCAAGCTGGGGCTTTTTTTGCCATGCGGTTCCTCAAAACGAAAGACAGCACCTATGAAACTATGTGAGCAATATTCATTTATTAACCGAATCTGAGCTTTTCTTGATTAATTTTGTCCTTCAACATTTAATGCATGCCATTTAAGGCATGTACATGCAGAATGATTCATTCTGTAGATCAGTAACTGTTTTTTCTCCCTTCTCTTACAGTGATCAACCTCAGTGAGAAAAGAGGTCGTGAATGAGAGAGAAAATTACAAAACAAAACATAAAGAGAAGCAGATATTCACAGGAATAGATGATGCATGGGCGAGAAGTCTATAGACACTGTTTTCTCTTTTTGAGGGTCCTAAAATGTTATTATTAGCCTTTAAATTACTTTGGTTAAATTATCACCAACTATATTTGTGTGTATATAAGAGAGATATGTGAAAAGAAAACAATATAGAAGTAATATGAGAAATATATTAGAGGATTATTCACATTTGAATGTGGGTTTATGATGGTCTCTAGTGGTGTGTGTTCTTATCTGTTTAAGTTGATTTAAATCTCTCTGGTTTGTTATATTGATCTGAAAGAACAATTCTGCTTCATATTTTGATTAATTGCATGCCCTTGTATTTTCTTTTTATTAAATGTTATGTTTTGTAGGTAGTCACCTAGACTCATGTAGCATTAAGTTTGTTATTCCTTTATGAATAATGAAGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_01122882_01126143.mRNA True 1227 mRNA 0.38 4 1122882 1126784

Neighbor

gene id symbol gene type direction distance location
CI01000054_01103702_01106852 NA coding upstream 16030 1103441 ~ 1106852 (+)
CI01000054_01087465_01101501 AHDC1, METTL24 coding upstream 21108 1086932 ~ 1101774 (+)
CI01000054_01042925_01056338 NA coding upstream 66321 1042891 ~ 1056561 (+)
CI01000054_01007770_01028369 MATN1, SESN2 coding upstream 94050 1007652 ~ 1028832 (+)
CI01000054_00992036_01004247 NA coding upstream 118490 992036 ~ 1004392 (+)
CI01000054_01133011_01143370 NA coding downstream 6227 1133011 ~ 1143612 (+)
CI01000054_01173734_01187846 KIAA0319L coding downstream 46950 1173734 ~ 1188947 (+)
CI01000054_01190021_01201007 CAP1 coding downstream 63237 1190021 ~ 1201723 (+)
CI01000054_01212755_01219670 NA coding downstream 85762 1212546 ~ 1220783 (+)
CI01000054_01227110_01229796 EEF1A1L1 coding downstream 99595 1226335 ~ 1230329 (+)
G229883 NA non-coding upstream 531 1122092 ~ 1122351 (+)
G229872 NA non-coding upstream 63731 1058008 ~ 1059151 (+)
G229865 NA non-coding upstream 109481 1013175 ~ 1013401 (+)
G229864 NA non-coding upstream 111754 1010721 ~ 1011128 (+)
G229849 NA non-coding upstream 137729 983600 ~ 985153 (+)
G229806 NA non-coding downstream 17349 1144133 ~ 1144557 (+)
G229770 NA non-coding downstream 19506 1146290 ~ 1151146 (+)
G229831 NA non-coding downstream 34418 1161202 ~ 1161520 (+)
G229891 NA non-coding downstream 41827 1168611 ~ 1168843 (+)
G229779 NA non-coding downstream 116990 1243774 ~ 1244341 (+)
G229760 NA other downstream 139566 1266350 ~ 1273750 (+)
G229936 NA other downstream 270296 1397080 ~ 1407130 (+)
CI01000054_01578022_01579167 NA other downstream 451651 1578022 ~ 1579356 (+)
CI01000054_01650242_01665628 PLEKHO1A other downstream 524176 1650242 ~ 1666115 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014292 cd164l2 coding NC_007130.7 CM002903.2 43563179 ~ 43572298 (+)