CI01000054_01133011_01143370


Basic Information

Item Value
gene id CI01000054_01133011_01143370
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 1133011 ~ 1143612 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_01133011_01143370.mRNA
AGTTTTATCGGATATAATCGACACGCTAACCGCACGTGTTTTTACGGTAGCTGTTCGATCAAACTTATATTGGCGGACGCGGTCACACTTTTAAACCCAGTTATGTTGTCTTCCAGCAGCTCGGCAGGGTGCCACAGTCAACTGTATAACTCCATATGTTCATATCTGCACAATCAGAACAGAGCACAGCCCATCATTGGTCTGAACTCCATCACTGAGGTGTTGACGTACAGTCAGCCTGCACTGTACTTTTGTGATGTCTGCTTTTTGAGAATAACCAAGCCTGACATCAGAAACCACATCATGGGGAGCATTCACAGATACAATTACATTAAATCTCATCATGCATGTGGGTGGAGATCTTATACAGACCTGACTCTTCTGGCTCGGCCTCTCATGGATATCGCAAAAATGATTGAAAAGAGGGAGGGAACAGGTGATGTACAGGTTCTGTGTGTGGATGAAGTCATCTACAACAAGATGACATCATTGCCTGTCCCTGATGCTTTTGCGCAAATGAAGAAGATTAAGAATCAGCGAAACTCTAATGCGATTCATTCGCTTGTTCATAACAGCCCATCTGAAGTGAAAGGTAATGAAACCAGCTTTCAAGAGCAGCAAGAGTCTGGCAACACAGACGGGACTGCACAACTTCCAACTTTACGATGTTCGCACCCGACACCGTGTGCATCTGCAATACCATTGAGGTCACCAAATGCATCGCCCCCTAGAACCGAAGGTTATCTCAAACCATTGACCAAATGCCAGGAGTCATCTACACTTCGGAGTCTAGTGGATTCTCCTGTTTCATCTAGAATACCTTGTCTAAAAAACTCCCTGGCTCCAGCCTTCGTCCAACACATAAATCAGGATCAACCTGTGATCCTAGACAGAAATCAGAGTCTACAAAGATATATGACGCCATCTGAAAACCAGTGTCTAACTGAAACAAGGACAATCACTGTCGTAAGACCACCAAGACAGTGGAGCCCCATCAGAATTGCTTTCCAGAATGACACTGTGCATGCTGGTGAAGAAGATGGGAATAATGTCATCCATTCATTTGGAGTCTACGAATCACATCCACTGCACCCAGCCCAAACCACGCCATATGAAGCCCAGCTGCAAACTCCAGTGAACCACATGGTACCAGAGGTAACCCAGAGTCTAACAAGCAGGCATAGATTTTTCATAAATGAAAGCTCACCTGATAGCCCAGAGCCTGTCAGGGATGTGGAGATTACCAGTGTTATAAAGCTCATCAGAACACAGATGCTAAAAGGAGCATTGGAACCAGCTGCAACACACGATTCAAATCAATCCCATGATGAGGCTAATTCACAGGAACCAATCGACACCAATCAGGAAGCACATGTGGAGGCTCAATCAGACAACTCTGAAGAAGAGAATGGTTTTCTGTTCTCACAAAACCCGATTGCCCAGTCCCCTCAGACTCAAAGCCCTTCTGATCAAGTTGAATCCATCCACAACTACAAGGGTCGAAAGCCTCTTATCGGTCTACAAGCTGTTATCAAGTGCCAGAGCGTGGATGGGAATCCACCTCCATGCTGTTACCTGTGTCGGCTGTGCTCTATGAAGCTGAAGAAGACGAAAATATTCAGCCACCTGACTAGCTGTGACCACCAGCGAAACTACCTAAAAGCTCTCCACCCGCAGCTCCTGCCAAAAAAGCGTAAACACTGCAACACAAATGAGATGCTTGAGGATATTGCTATCAAGTTGGAGAAAGAGGACGGAAGAGGACAAATAAAGGTGATGAGGTTGTCCGCTTGTCTCATAAGTGAGGCACTGCACAAGGATTATCAATGGTGTATGAAGATGTTGAACTGTGGAGATGATGTGGGGTGGAGATCAGATCTGCTGTCTTTAAAGGATAGAACTGACAAAACCACAGGTCCCAGTCAGACTCTTAAACGCCCAGCCGAGTCTCTGCTACCCCCTTCTGAGAAATCTCCTATTAAAGCTCCTGATGGACCTCCAACCCATCAGATGCCCAAAAAAATCAAGAAGGACCATCTTAAGCAAGTCATGAGCATTAACAAAATAAAGAATCCTGTGTTTAAGGTAAGCCTGTCACTGCAGGAGGGACCCGTCGTCATTGAGAGAACTTCTCTACGAGACACAGTCACAGTGGCACCTGAGATCGAAAGCCAAAGCCATGCGTCCACATGCACAGATGATGATGTGACTAACACACATCCTGAGGTTCAAACGTGCAATCACGGATTCCCACCCACAGTACACTGTGAGAGTACACAGCAGTATCCTGACGGAGATGTGCTCGCTCAGACGGACGTTCCCACACTGACCTATACACACACTGAGTTGGACTCAGACATGGACAGTCGTATGTGTGAGGATCAGTTCATGAATCCTGCTCAGTATGCATACTCAGGGCAGTTTGACCAACCTCAAGTCATCCAAACGGTCCAGCCTTCTCTCAGACCTAAGGACAGCGGGTCGGTGGACGAGGTGGTCGCTGTGACGTATACTGAATGGCCGGAGCAGGACTGGTCCTTCTATAACAATGAATGGATTGCGATGAGGCAAAACCAGGGTGGAAGTGATCATCATCCTGAGTGTGGAGGTTACATGCAGTACTGGTGAGAATGAGTCTTCCAGCGCTTAAAAAAATGCAACAAATAGTTTGAACATGTTTTTGCAACAGAATTCAGTTCAAACTGTATTTAAGTCTTTTTCAAAGCAGCCGAATTTGTGCAGTTGGTAAAGAAATGGGACTGAATCATCACTGAATTATTAAGCTGTATTTAGACATCTCAAAAAAACTTGAAAGGGCTTCTACTTCATATATATCACTTGTGCTTCTTTAGTGAATGCAGATTAATCCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_01133011_01143370.mRNA True 2870 mRNA 0.46 14 1133011 1143612

Neighbor

gene id symbol gene type direction distance location
CI01000054_01122882_01126143 NA coding upstream 6227 1122882 ~ 1126784 (+)
CI01000054_01103702_01106852 NA coding upstream 26159 1103441 ~ 1106852 (+)
CI01000054_01087465_01101501 AHDC1, METTL24 coding upstream 31237 1086932 ~ 1101774 (+)
CI01000054_01042925_01056338 NA coding upstream 76450 1042891 ~ 1056561 (+)
CI01000054_01007770_01028369 MATN1, SESN2 coding upstream 104179 1007652 ~ 1028832 (+)
CI01000054_01173734_01187846 KIAA0319L coding downstream 30122 1173734 ~ 1188947 (+)
CI01000054_01190021_01201007 CAP1 coding downstream 46409 1190021 ~ 1201723 (+)
CI01000054_01212755_01219670 NA coding downstream 68934 1212546 ~ 1220783 (+)
CI01000054_01227110_01229796 EEF1A1L1 coding downstream 82767 1226335 ~ 1230329 (+)
CI01000054_01231236_01238870 NA coding downstream 87177 1230789 ~ 1239069 (+)
G229883 NA non-coding upstream 10660 1122092 ~ 1122351 (+)
G229872 NA non-coding upstream 73860 1058008 ~ 1059151 (+)
G229865 NA non-coding upstream 119610 1013175 ~ 1013401 (+)
G229864 NA non-coding upstream 121883 1010721 ~ 1011128 (+)
G229849 NA non-coding upstream 147858 983600 ~ 985153 (+)
G229806 NA non-coding downstream 521 1144133 ~ 1144557 (+)
G229770 NA non-coding downstream 2678 1146290 ~ 1151146 (+)
G229831 NA non-coding downstream 17590 1161202 ~ 1161520 (+)
G229891 NA non-coding downstream 24999 1168611 ~ 1168843 (+)
G229779 NA non-coding downstream 100162 1243774 ~ 1244341 (+)
G229760 NA other downstream 122738 1266350 ~ 1273750 (+)
G229936 NA other downstream 253468 1397080 ~ 1407130 (+)
CI01000054_01578022_01579167 NA other downstream 434823 1578022 ~ 1579356 (+)
CI01000054_01650242_01665628 PLEKHO1A other downstream 507348 1650242 ~ 1666115 (+)

Expression


Co-expression Network