CI01000054_01212755_01219670


Basic Information

Item Value
gene id CI01000054_01212755_01219670
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 1212546 ~ 1220783 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_01212755_01219670.mRNA
TAATAAATACAGCTTCAGACACACATGCACTGAGCCCATGATTGTTGATAATGATGATGATGAAATTGTTTACAACTCATGTATTTTGACACCACAAAAGAGATCAGCTGCATTATCTGAAATGTCTTGTTTTTGTTTCAGGATTTGTGGATGTCATACTTCGACTAGCTCAAGTTCAATTTAAAACTTACACCTTAACCTCTGCGATCATGGCATTACAACACGGCTACTCCATTAACTCGAGCGCGGATGACCAGGACAGTGACACTGCGCCGCTTTTAGAAAATGAAGTGAAAAAAATCACAGTGCCTCCCAAATGCTGCTCAGTACGATGCAATCTGGCTGCTATGATGTTCTTTGGCTTTGCTGTGGTCTATGGTCTGCGTGTAAATCTCAGTGTTGCCATGGTTGCTATGGTAAATGGAACTAATGACCAGCCGCCATCCAATAGCAATATATCCAATGAGTGTCCAGGATCTTCCCATACACTTCACAACAACAGCCAAAGCTCAGAACAGCCAGAAGGGATTCCAAGATACCCATGGAATGCCGAAACGCAGGGAATGCTGCTTGGTGCTTTCTTCTTTGGATACCTGTTTACTCAGATCCCCGGAGGCTACCTGTCAGGTCGCTTTGGAGGAAGCCTTTTCCTTGGTGGTGGTGTGCTTGGAACAGCTGTCCTCACTCTCCTCACTCCACTGTCAGCACAGCTTGGAGCCAAGTGGCTGTTTGCCTTGCGTGCGCTGGAGGGATTCGGGGAGGGTGTGACGTTTCCTGCTATGAGTGCGATGTGGGCCCGCTGGGCTCCTCCGTTGGAGAGGGCGCGTCTGATGACGTTCTCCGGTGCAGGATCTAGCTTCGGTGCCTTTGTGGCTCTTCCTCTCACTGGCTTAATCTGCAATAGTCTAGGATGGCCAGCAGTTTTCTACTCCTGTGATGAACCCCGAACTCACCCAAGAATTAGTGACAGAGAGAAAAATTACATAATTAACACCATAGGTTCACAGGGGCTGCCTCATGGTTGGTCAGTGCCTGCATTATCGATGCTGCTCTCTGTGCCTCTTTGGGCCATAATCATCTCACAGATGTGCACCAACTGGTCTTATTACACTCTCCTCACCTCACTTCCTATCTACATGGACACTGTGCTCCACTTTGATTTGCAACAGAATTCGTTCCTCTCTGCTCTTCCGTATCTGGCTGGCTGGCTGTTCTCAGTGGGCTCAGGTGTGCTGGCAGACAACCTCCTGGAGAGGGAGCTCCTGACTGTCACAGCCGTCCGAAAACTCTTCACTTTCATTGGTCTGTTTCTACCCGCTGTTTTCCTGCTTGCGGTGGGCTTCTCGGGGTGTAGCGGTTTGCTGGCCGTGACTTTTCTGACTTTGTCCAGTGCGTTTGGGGGATTCAGTGCTGCTGGTGTCTTCATTAACCAGATCGATATTGCTCCACGGTATGCGGGTATGCTTCTAGGAATCACAAACACTTTTGGGACCATCCCTGGTGTTCTTGCACCAATTGTTGTGGGTTACTTGACCAAAGATCACTCAGCTACAGGATGGAGGCATGTGTTCTTTTTGTCAGCTGGAGTGAGCGCCTTCGGAGCCATTTTTTTCATCATCTTTGGCACTGGAAAGATTCAGAGCTGGGCAAGGACAGATGAGGAATCAGACACAGATATGCGCAATTAAACATTCCAGTTGACCAATTCAGAGGGATATTAGAACTGACTTATTTGAGTTTGACTGGTGCCACTCATGGCACCAGTTCGGACTAACTTCACTTTGTTTTTCATGATCTTCAAAGAAATAATGTTACACTTAGACAAATATAAAATGTGCTATTACCTTTTTTTTATTATTATTATTATTATTGAACCAGACAGTAATTTTTTAGGTCACTGCATAATTCCCATACTTTGAATACAATTATTCATAAAAGCAGAAATGGTTAAACTTTTTGTCCAAACTTTTGATAATAATTATATTTCACTCAGGAAAAAATCTAAAGTGCCTTAAACAGAGTGATGTTTATTATTCTGGTGATATTTCACTTGTTGAGTTAATCATGATGGAATGGAGAAATTACATATCCTAATTCTGTTATTTTGCTATCTTTTAAAGAAGTGCAGTATGTGGTACATTGCTGAAAAGGAACAAATTTAGAGGATTCAACCATATTTTATTGCATTTGAAAATACTTATTAATAAGCACTTTAATGCATCAATAACAAAAATACTTTATTTTGGGGGGATACCAATGCATTTTAAGGTCATTTTAATCCTGCTAATGAAGTAACTGTACTCTATTAATTGTCATTCAGCACTAGGTCATCTAACATTTTCACGAAAACCATGGTGTTGACAGATACAGTCCATTCATGTTTACTATTAATAGTCCAGACAGGGAATTATTGTTTCATTATTGTTTGAAACTTGCCTTTGTTCAAAAGTTGAAATGTTTAATGAATTTAATGGAGTTTTTAAGTCATTAACTTAATGCTTATTTTAAGCACTCAACGGCCTGGTTTCACAGACAGGTCTTAGATTAAGCCAGGATTAGGCCTTAGTTTAATAAGGACATTTAAGAAACTTTTATAAACGTGCCTTAGAAAAAAACATTACTGACATATTTAACATATGTCAGTGCAAGTTGCTTTCCATTAAATCAGCTCAAACATGCATTTTAGTCTAGGACTAGGCTTAAGCCTTGTCTGTGAAACCGGGGCAATGAGTCTATGTTTGAGTCTCAATTTTTTTTTTTAAATTATAAATCATATACATTTCTGATTATGATCATGCACA

Function

GO:

id name namespace
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_01212755_01219670.mRNA True 2801 mRNA 0.41 10 1212546 1220783

Neighbor

gene id symbol gene type direction distance location
CI01000054_01190021_01201007 CAP1 coding upstream 10823 1190021 ~ 1201723 (+)
CI01000054_01173734_01187846 KIAA0319L coding upstream 23599 1173734 ~ 1188947 (+)
CI01000054_01133011_01143370 NA coding upstream 68934 1133011 ~ 1143612 (+)
CI01000054_01122882_01126143 NA coding upstream 85762 1122882 ~ 1126784 (+)
CI01000054_01103702_01106852 NA coding upstream 105694 1103441 ~ 1106852 (+)
CI01000054_01227110_01229796 EEF1A1L1 coding downstream 5596 1226335 ~ 1230329 (+)
CI01000054_01231236_01238870 NA coding downstream 10006 1230789 ~ 1239069 (+)
CI01000054_01353780_01357766 ZCCHC17 coding downstream 132785 1353568 ~ 1357859 (+)
CI01000054_01368287_01374709 DCLK3 coding downstream 147504 1368287 ~ 1375026 (+)
CI01000054_01378423_01387679 CYHR1, CYHR1.L, CYHR1.S coding downstream 157510 1378293 ~ 1388263 (+)
G229891 NA non-coding upstream 43703 1168611 ~ 1168843 (+)
G229831 NA non-coding upstream 51026 1161202 ~ 1161520 (+)
G229770 NA non-coding upstream 61400 1146290 ~ 1151146 (+)
G229806 NA non-coding upstream 67989 1144133 ~ 1144557 (+)
G229883 NA non-coding upstream 90195 1122092 ~ 1122351 (+)
G229779 NA non-coding downstream 22991 1243774 ~ 1244341 (+)
G229919 NA non-coding downstream 84094 1304877 ~ 1305133 (+)
G229745 NA non-coding downstream 85587 1306370 ~ 1311971 (+)
G229746 NA non-coding downstream 93849 1314632 ~ 1331530 (+)
G229933 NA non-coding downstream 169984 1390767 ~ 1391918 (+)
G229760 NA other downstream 45567 1266350 ~ 1273750 (+)
G229936 NA other downstream 176297 1397080 ~ 1407130 (+)
CI01000054_01578022_01579167 NA other downstream 357652 1578022 ~ 1579356 (+)
CI01000054_01650242_01665628 PLEKHO1A other downstream 430177 1650242 ~ 1666115 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location