CI01000054_01578022_01579167


Basic Information

Item Value
gene id CI01000054_01578022_01579167
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 1578022 ~ 1579356 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_01578022_01579167.mRNA
ATGCCACACCAGCTGGTGGCAGAACAGTTCCTGATTTTGGAAAGATGTATCATGTCAAAGTTTGAGAAGATGGAGGATTGCGCAGGCGTTCAGTGTGAGGTCTGGAAGAAGGTCACACAGGCTGGTCATAAGAAGAACACATATCGTCTGTGGGTCAAACGTCCCGAGGGAAGTGATTCCCCAGCCGTCCCGTACCACTTTGAGATGGAGGGCTTTAACACTCTTTTGGAGTCCTATAATGACAAATACATGATTGACTACAGTGACTTCAGCTCACAAACTGAATCGGACATTTTCACACCCCCTGGAGAAATGACCTATGAGGAGTTTCCGGATCCTCCTGAGGAGCATCAAATATTGGCCAATCCTCTTCAAGACTTTGTCAGCACCTCCCCTGTTAGCCACGCCCACCGATTGTTCGGCCCCTTTAAGGAGAAGTTTGAGCGTCATTATGAAAGTGAGAAGGAGAACGAGGAGCGCGAGAACAACTTTGTACATAATCTTCGGTGAGGAAAAACAACAAACAGTAGATATTTAGTTATGTATAATGACATTGTAAAAATAGACACCAATTTTATTATTTACATAATCTATTAAATAAGCAATACAGTATGACAGTCTATGCTATATTGTGAATATAGTCATGGCTAAAAAACTTAGGAAATTACAACTTGAAAACCAAACAGAGTTCACTGCCAA

Function

NR:

description
26-29kD-proteinase protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_01578022_01579167.mRNA False 699 mRNA 0.42 3 1578022 1579356

Neighbor

gene id symbol gene type direction distance location
CI01000054_01568746_01575755 SYTL1 coding upstream 2267 1568746 ~ 1575755 (+)
CI01000054_01556797_01565522 FKBP9 coding upstream 12235 1556797 ~ 1565787 (+)
CI01000054_01535826_01544666 NA coding upstream 32472 1535826 ~ 1545550 (+)
CI01000054_01378423_01387679 CYHR1, CYHR1.L, CYHR1.S coding upstream 189759 1378293 ~ 1388263 (+)
CI01000054_01368287_01374709 DCLK3 coding upstream 202996 1368287 ~ 1375026 (+)
CI01000054_01589927_01595736 NA coding downstream 9612 1588883 ~ 1595857 (+)
CI01000054_01613638_01617674 PSB4, PSMB4, PSMB4.L coding downstream 33962 1613318 ~ 1618357 (+)
CI01000054_01634335_01637623 NA coding downstream 54979 1634335 ~ 1637922 (+)
CI01000054_01639395_01647833 VPS45, VPS45.S coding downstream 60039 1639395 ~ 1648954 (+)
CI01000054_01650242_01665628 PLEKHO1A coding downstream 70886 1650242 ~ 1666115 (+)
G229958 NA non-coding upstream 59464 1516335 ~ 1518558 (+)
G229764 NA non-coding upstream 64018 1513144 ~ 1514004 (+)
G229956 NA non-coding upstream 68223 1508570 ~ 1509799 (+)
G229811 NA non-coding upstream 69542 1508033 ~ 1508480 (+)
G229955 NA non-coding upstream 73299 1504324 ~ 1504723 (+)
G229815 NA non-coding downstream 5981 1585337 ~ 1586014 (+)
G229967 NA non-coding downstream 24968 1604324 ~ 1604605 (+)
G230449 NA non-coding downstream 156486 1735842 ~ 1739334 (+)
G229936 NA other upstream 170892 1397080 ~ 1407130 (+)
G229760 NA other upstream 304272 1266350 ~ 1273750 (+)
CI01000054_01227110_01229796 EEF1A1L1 other upstream 347693 1226335 ~ 1230329 (+)
CI01000054_01725792_01726688 NA other downstream 146313 1725627 ~ 1726793 (+)
CI01000054_02289802_02330591 SLC25A13 other downstream 710475 2289802 ~ 2330981 (+)
G230689 NA other downstream 1499146 3078502 ~ 3087392 (+)
CI01000054_03848427_03914231 NA other downstream 2329095 3848427 ~ 3914231 (+)

Expression


Co-expression Network