CI01000054_01639395_01647833 (VPS45, VPS45.S)


Basic Information

Item Value
gene id CI01000054_01639395_01647833
gene name VPS45, VPS45.S
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 1639395 ~ 1648954 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_01639395_01647833.mRNA
ATGAACGTGACTCTGGCTGTCAAGCAGTATATTTCCAAAATGATAGAGAGCAGCGGACCCGGGATGAAGGTGCTGCTGATGGACAAGGAGACGACCAGTATTGTGAGTGTGGTCTACACTCAGTCTGAGATCCTGCAGAAGGAGGTCTACCTTTTTGAGCGCATTGACTCACAAAACCGAGACAATATGAAGCACCTTAAAGCCATCTGCTTTCTCCGGCCAACCAAGGAGAACGTAGAGCACCTGATTCAAGAGCTTCGTCGGCCCAAGTATAGTGTCTATTTCATCTATTTCAGTAATGTGATCAGTAAGAGTGAGATAAAGGCTTTGGCTGAGGCAGATGAACAGGAAGTAGTTGCAGAAGTGCAGGAGTTCTATGGAGATTTCATTGCTGTGAACCCTCATCTTTTCTCCCTCAACCTTCAAGGAGTGTCCAGGGGTCGCAGTTGGGAGCCCAGTGTACTGCCTCGTGTCACTCAGGGTTTGACATCAGTGCTGCTGTCCCTGAAGAAATGCCCCATGATCCGCTACCAGCTCTCTTCTGACATGTCCAAAAGGCTGGCAGAGAGTGTCAAACAAATCATTACTAAGGAGTATGAACTGTTTGACTTCAGAAAAACAGAAGTACCTCCTCTTCTCCTGATTTTAGACAGAAGCGATGATGCCATTACTCCCCTTCTCAACCAGGCAAGAAACAATTGGACGTATCAGGCTATGGTTCATGAGCTACTGGGCCTCAATAACAACCGCATAGACCTGTCGAGAGTGCCTGGAATCAGTAAGGACCTACGGGAGGTGGTCTTGTCTGCAGAAAATGATGAGTTTTATGCAAATAACTTGTACCTGAATTTTGGTGAGATTGGAACAAACATCAAGAACCTGATGGAGGATTTTCAGAAGAAAAAGCCCAAGGACCAACAGAAGTTAGAGTCCATATCTGACATGAAGGCATTTGTGGATAACTACCCCCAGTTTAAGAAAATGTCTGGCACGGTCTCAAAACACGTGACCGTGGTTGGGGAGCTGTCCCGCCTGGTCAGTGAAAGACAGCTGATGGAGGTGTCAGAGGTGGAGCAGGAGTTGGCCTGCCAGAATGACCACTCCAACGCACAACAGAGCTTGAGGCGGCTACTGCAGAACCCTCGGCTTTCTGAAATCGACGCTGTGCGGCTGGTGATGCTGTATGCTCTTCGCTACGAGAAACACAGCAGCAGTATTCTGCCCAGCCTTATGGAAGAGCTCAATCGCAAAGGGGTGTCAGAGAGACACCGCAAGATGGTGCAGGCCGTGGTGGAATATGGCGGAAAACGAGTCAGAGGAAGTGACCTCATCGCTCCTACAGATGCTGTGGCCATTACCAAGCAGTTTTTCAAAGGACTCAAGGGAGTTGAAAATGTGTACACACAGCATCAGCCACTTCTACATGACACGCTGGATCAGCTGATCAAGGGTCGTTTGAAGGACAGCCAGTTCCCCTACCTCGGGCCAAATTCTCTGAGAGACAGACCTCAAGACATTATTGTCTTCATAATTGGCGGGGCCACTTACGAGGAGGCATTAACTGTTTACAACCTGAACCGCACAATGCCGGGGGTACGCATCGTACTCGGGGGCACGGCCATTCACAACACTAAGAGCTTCCTGGAGGAAGTGATGCTCTCTGTGGGTTCAGGTGGAGACAGGACACAAGGAAGAGGCCGTCAGATGAGTCGACGTTGAGCTGTTCTCATCACTCATATTAATGTGCGCTGTCTGTCCTCTGAACCCTGAGCTGAGCACATTTGCCCTCTTTTTCTCTCTCCTAACATTCCTTTGAAATGTTTCAGTTTTAGGGAGGTAAATGGTAATACTGCACAGTAATTCTTTAACATTAATGAACAATGAACAACAATTTGTACAGCATTTATTAATATAGGTTGCATATAAATAATATATTAATAAATATACTATTGTTCATAAATGTTTGTTCATAAGGACAAGCAACAATCTGAATTGTTAAAAATGTGTTAGTATATGTGGAAATGTGCAGAAATATGTAGTAAACATTAGCCTAAATTAATAAATATTGTAAAATTCTTGTTCATTGTTAGTTCACGAGACTTAATGTGCTAACCAATACTAATGTAAATGAGTTGAAACGTATTGTAAAGTATTATTTATATATAAAATAACACTTTACAATACGTTTCAACTCATTTACATTAGTATTAGTTAGCGTATTAAGTCTTGCTTATATATATATATATATATATAAGCAAAGTGTTGATAATGGTATGTGAAACACTGTAAATGTGCATAACTTTTATTATGTAAATAATACCCCAAAAGTGTTCACAATGACAGCATTTTTATTTATTGGCTTGGTGATGCTGCATTTGATCATTTTTGGATAATGACTACTGTATGTTTCAGTAAAATAGTATATACACACAATATATATATATATATATATATATATATATATAATGTGAAATTTTGTGCCCAACAAAGCTGGAAAAATTATTAATGTCTTTAAATCGAGAAGAAGAGCTCATCAGTTCACAATTACTATAATATTAATGTCCATCAAAGGCTTTTAACAATTAATATGACCGTTCTTGGTAGACAAAAAGTTTCAATCAGTGAGCTTTAAAGCCTTGTATAAAACATCTTCGTGTGTCCGTGCGTGTCTTTTTTTCGTAAGTCCTACTAATTTATCTTTGCCTTTGTACATAGCTTGATTAACCTGACAACATAATAAGTGACAATATTTTATGATGATCTTCA
>TU260739
ATACGTTTCAACTCATTTACATTAGTATTAGTTAGCGTATTAAGTCTTGCTTATATATATATATATATATATAAGCAAAGTGTTGATAATGGTATGTGAAACACTGTAAATGTGCATAACTTTTATTATGTAAATAATACCCCAAAAGTGTTCACAATGACAGCATTTTTATTTATTGGCTTGGTGATGCTGCATTTGATCATTTTTGGATAATGACTACTGTATGTTTCAGTAAAATAGTATATACACACAATATATATATATATATATATATATATATATATAATGTGAAATTTTGTGCCCAACAAAGCTGGAAAAATTATTAATGTCTTTAAATCGAGAAGAAGAGCTCATCAGTTCACAATTACTATAATATTAATGTCCATCAAAGGCTTTTAACAATTAATATGACCGTTCTTGGTAGACAAAAAGTTTCAATCAGTGAGCTTTAAAGCCTTGTATAAAACATCTTCGTGTGTCCGTGCGTGTCTTTTTTTCGTAAGTCCTACTAATTTATCTTTGCCTTTGTACATAGCTTGATTAACCTGACAACATAATAAGTGACAATATTTTATGATGATCTTCAATAAATGAAAGGAAAAATGTTAATCAATTGATTCATCCAATAAATTCAGACCAACACATTTTCATGTTTTTATT

Function

symbol description
vps45 Acts upstream of or within regulation of lens fiber cell differentiation. Predicted to be active in Golgi membrane. Human ortholog(s) of this gene implicated in severe congenital neutropenia 5. Orthologous to human VPS45 (vacuolar protein sorting 45 homolog).

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component

KEGG:

id description
K12479 VPS45; vacuolar protein sorting-associated protein 45

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_01639395_01647833.mRNA False 2766 mRNA 0.41 15 1639395 1648880
TU260739 True 660 lncRNA 0.28 1 1648295 1648954

Neighbor

gene id symbol gene type direction distance location
CI01000054_01634335_01637623 NA coding upstream 1473 1634335 ~ 1637922 (+)
CI01000054_01613638_01617674 PSB4, PSMB4, PSMB4.L coding upstream 21038 1613318 ~ 1618357 (+)
CI01000054_01589927_01595736 NA coding upstream 43538 1588883 ~ 1595857 (+)
CI01000054_01578022_01579167 NA coding upstream 60039 1578022 ~ 1579356 (+)
CI01000054_01568746_01575755 SYTL1 coding upstream 63640 1568746 ~ 1575755 (+)
CI01000054_01650242_01665628 PLEKHO1A coding downstream 1362 1650242 ~ 1666115 (+)
CI01000054_01706858_01711137 NA coding downstream 56852 1705732 ~ 1711250 (+)
CI01000054_01725792_01726688 NA coding downstream 76747 1725627 ~ 1726793 (+)
CI01000054_01871659_01875753 NA coding downstream 222668 1871548 ~ 1876210 (+)
CI01000054_01879983_01965668 TRIO, TRIOA coding downstream 231103 1879983 ~ 1966159 (+)
G229967 NA non-coding upstream 34790 1604324 ~ 1604605 (+)
G229815 NA non-coding upstream 53381 1585337 ~ 1586014 (+)
G229958 NA non-coding upstream 120837 1516335 ~ 1518558 (+)
G229764 NA non-coding upstream 125391 1513144 ~ 1514004 (+)
G230449 NA non-coding downstream 86962 1735842 ~ 1739334 (+)
G230462 NA non-coding downstream 118543 1767423 ~ 1807305 (+)
G230463 NA non-coding downstream 209308 1858188 ~ 1971861 (+)
G230496 NA non-coding downstream 361122 2010002 ~ 2010436 (+)
G230500 NA non-coding downstream 367394 2016274 ~ 2018368 (+)
G229936 NA other upstream 232265 1397080 ~ 1407130 (+)
G229760 NA other upstream 365645 1266350 ~ 1273750 (+)
CI01000054_01227110_01229796 EEF1A1L1 other upstream 409066 1226335 ~ 1230329 (+)
CI01000054_02289802_02330591 SLC25A13 other downstream 640951 2289802 ~ 2330981 (+)
G230689 NA other downstream 1429622 3078502 ~ 3087392 (+)
CI01000054_03848427_03914231 NA other downstream 2259571 3848427 ~ 3914231 (+)

Expression


Co-expression Network