CI01000054_01650242_01665628 (PLEKHO1A)


Basic Information

Item Value
gene id CI01000054_01650242_01665628
gene name PLEKHO1A
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 1650242 ~ 1666115 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_01650242_01665628.mRNA
TTGAAAATACAAGTTAATCAGTTCTGGTGTTGGATGGAGCAGTCGAGCTCTATAAACGGGAAAATCCGTGTCGGTGAGAAGCACAGCAGCTCAGGGACTCACCCAAGCCAATGGAGAGCCTGTGCCCGCGGTTTGCAAATCGTCAATGTAGAGACTGGCAGTCCATCAGTGCTGAGAGCCAACAGCTCGTGCCATATACAACACCTGCACGCGGCAAATTCACATCAAAAGATAAACAAAAACACCTCAGTTTCTTCTAGAAAGCGGGACAGATCGCGGGATATACGTCGGAAAAGACATTTTGCGAACAGCATGAAGAAAAGCCATTTGGTCAAAAGGGGTCTTCAGGATGCCAACCAGCCGTCGTCCCAACCAGACAAAGTAGGCTGGATCCGCAGGTTCAGCGGCAAAGGAATATTCAGGGAAATATGGCGAAATCGCTTTGTGATGCTTAAAGGAGATCATCTGTACATCTTTGAAAAAGAGATGAAGAATAATGGGAAGACTCATGAAGTGTTTGACCTGGCACAGTACGAGCGCTCGGAGGAACTGCGAAAGGCCAAGAGCCACAGCAAGAAGAACCACAGTAAATTTACCCTGCTCCGCTGCCAACACCCTGGAAACAAGAGCCCCAATCTTGTGTTTCTGGCCGTGAGTCCAGAGGAGAAGGAATCTTGGATCAATGTTTTAAATACAGCGATTATCAGAGCTAAGAATCGCGTGCTGGATGAGGCCTCTGCCTCCTCTGATGGAATGCTGATGCTGGACTTGGTGAATGAGGAAGATGCTGGTATGCTCGGTGACGATCAGGATGAGTGGTTGAAGGACCATCGGGTCAGCCTGGATAAACTGGCTCCTGGCCGTCGACGAGCTGGCACCGATGCGTCCAGACCGCCGTCCTCCATTACAGAGGCCAAGGTGAAAACCAGCAGCTTACCACGCAGGACAGAGTTCTCCTGGAGCCATGAAAACCAGCCTCAGACACCTCAAAGTGAGAAGAAGTTAGCTCAGGGCCGTAACCGATGTGCTTCCATGGATGACGCTCTGTCCCAAAGAGAGCGAAAACCAACTAGAAGGAATGGGCACCAGGCGACGCTGGCCCAGAGTCCCACGGGCCACCTGCAGGATCTGATCACCCAGCGGCTGCAGAGGACTCAAGAGCTACTCGCTGAGATTCAAGAACATGAACCCCATCGGGGCAGGATGGGATCTTACCCCTACCTGAGAGGCATTGACTCCCCCCGTCTCCGGCATCTCAAGGGCTCTGACTCGCCACACTCCAAGGGCTCAAGCTCGCATAGTTCGCCTCACAGCAAAGGCACAGACTCGCCCTCAGTGAGGGCGAAAGATTCGCCTGGTTCCAAAGGGAAAGAATCGCCACATGTGAAATCAAAAGACTCGCCCCGTTTCAAGTTGTCCAAATCCCCTCATTCCAAAAACTCACTTCGCTCAAAGAGCTTCGATTCACCTGATTCAAAAGAATCAAGTTCACCTCAAATGAAATGCATTGATCTGACCCACATCAAAGGTTCAGACTCGCCTCTGTCCACTGGCTCAAATTCGCCCCATATGAAGTCGACAGACGGTGCTTTTTCTCGAATCTCTTACTCGCCCCATTTCAAAAGCATGAAGGGTACTGATTCTCCTCTCAGTGAGGCTTTGGACTGGGACAGCAGGAGGGCGGCAGCTGAACGGCTCTTACAAGAGGCCATTTCCTCCTGGCGAGAAGCTAGAGAGGTTTTGGCTGAGGTAAAGGAGCTGCAAGCCAGACAGCAGCAGGCAGAGCACAGTAAAACTAGAACACCCACAACACCCTCAAAGAACCGCAAACAGAAAAGCACCTGACCAAATCTTTAGTCAGTCATAATGTTTGAATGCAAGGAATGAGAACAATAATGTGGAACTTTCTATTTTGCCCACAGCAAACCAGTGTTCTGTTTTATCTCAGTCTATTGTTTATATATTAACTGTTGTTCCTCTGACACCTCAACCCTTTGTCTTTGCACTTTGAACTACTGTATTTTTACTTGTGACTTCACTTTCAAGGCTGTAGTACTTCTGTTGGCATTGGTAATGTGTGATGTTACTCATGATTAAAGTGGTTTATGATTCACTTTTTGCAAAAACAGCTCAGGTGAAAAAAAAAAATGTTGGGATTTGTGTGGAAAAGAGTGTTTCAGGTAAAAGTTAGCAGTGGGAACATTAACGGTTTTTGGCAAGTCTATCCTGCTCCCCAATATCAGGTGGGTTAATCATAATTTGCATTTCAAAAGATATTTGTAGAATACCCCCCACCCCCTCCTAAAATTACTAAAGATGCACACATTGTAAA
>TU260765
TATAAACGGGAAAATCCGTGTCGGTGAGAAGCACAGCAGCTCAGGGACTCACCCAAGCCAATGGAGAGCCTGTGCCCGCGGTTTGCAAATCGTCAATGTAGAGACTGGCAGTCCATCAGTGCTGAGAGCCAACAGCTCGTGCCATATACAACACCTGCACGCGGCAAATTCACATCAAAAGATAAACAAAAACACCTCAGTTTCTTCTAGAAAGCGGGACAGATCGCGGGATATACGTCGGAAAAGACATTTTGCGAACAGCATGAAGAAAAGCCATTTGGTCAAAAGGGGTCTTCAGGATGCCAACCAGCCGTCGTCCCAACCAGACAAAGTAGGCTGGATCCGCAGGTTCAGCGGCAAAGGAATATTCAGGGAAATATGGCGAAATCGCTTTGTGATGCTTAAAGGAGATCATCTGTACATCTTTGAAAAAGAGATGAAGAATAATGGGAAGACTCATGAAGTGTTTGACCTGGCACAGTACGAGCGCTCGGAGGAACTGCGAAAGGCCAAGAGCCACAGCAAGAAGAACCACAGTAAATTTACCCTGCTCCGCTGCCAACACCCTGGAAACAAGAGCCCCAATCTTGTGTTTCTGGCCGTGAGTCCAGAGGAGAAGGAATCTTGGATCAATGTTTTAAATACAGCGATTATCAGAGCTAAGAATCGCGTGCTGGATGAGGTG

Function

symbol description
plekho1a Predicted to be located in cytoplasm; membrane; and nucleus. Orthologous to human PLEKHO1 (pleckstrin homology domain containing O1).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_01650242_01665628.mRNA False 2332 mRNA 0.48 6 1650242 1666115
TU260765 True 685 TUCP 0.48 4 1650960 1661565

Neighbor

gene id symbol gene type direction distance location
CI01000054_01639395_01647833 VPS45, VPS45.S coding upstream 1362 1639395 ~ 1648954 (+)
CI01000054_01634335_01637623 NA coding upstream 12320 1634335 ~ 1637922 (+)
CI01000054_01613638_01617674 PSB4, PSMB4, PSMB4.L coding upstream 31885 1613318 ~ 1618357 (+)
CI01000054_01589927_01595736 NA coding upstream 54385 1588883 ~ 1595857 (+)
CI01000054_01578022_01579167 NA coding upstream 70886 1578022 ~ 1579356 (+)
CI01000054_01706858_01711137 NA coding downstream 39617 1705732 ~ 1711250 (+)
CI01000054_01725792_01726688 NA coding downstream 59512 1725627 ~ 1726793 (+)
CI01000054_01871659_01875753 NA coding downstream 205433 1871548 ~ 1876210 (+)
CI01000054_01879983_01965668 TRIO, TRIOA coding downstream 213868 1879983 ~ 1966159 (+)
CI01000054_02024879_02026284 NA coding downstream 358764 2024879 ~ 2027615 (+)
G229967 NA non-coding upstream 45637 1604324 ~ 1604605 (+)
G229815 NA non-coding upstream 64228 1585337 ~ 1586014 (+)
G229958 NA non-coding upstream 131684 1516335 ~ 1518558 (+)
G230449 NA non-coding downstream 69727 1735842 ~ 1739334 (+)
G230462 NA non-coding downstream 101308 1767423 ~ 1807305 (+)
G230463 NA non-coding downstream 192073 1858188 ~ 1971861 (+)
G230496 NA non-coding downstream 343887 2010002 ~ 2010436 (+)
G230500 NA non-coding downstream 350159 2016274 ~ 2018368 (+)
G229936 NA other upstream 243112 1397080 ~ 1407130 (+)
G229760 NA other upstream 376492 1266350 ~ 1273750 (+)
CI01000054_01227110_01229796 EEF1A1L1 other upstream 419913 1226335 ~ 1230329 (+)
CI01000054_02289802_02330591 SLC25A13 other downstream 623716 2289802 ~ 2330981 (+)
G230689 NA other downstream 1412387 3078502 ~ 3087392 (+)
CI01000054_03848427_03914231 NA other downstream 2242336 3848427 ~ 3914231 (+)
G231863 NA other downstream 2741037 4407152 ~ 4450730 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014999 plekho1a coding NC_007130.7 CM002903.2 42367286 ~ 42391390 (-)