CI01000054_01706858_01711137


Basic Information

Item Value
gene id CI01000054_01706858_01711137
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 1705732 ~ 1711250 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_01706858_01711137.mRNA
GTATAAATGAGTAAGATGTCAAAGGAAAAGCCAGACAGATTATTTTTTCAGCCTAAGGAAGAAGATTCTGGGGTCACTTCCCATCCTCTGTACTTTAAAACTGAGCTCTGAGGAGGATCAGCACTTAAGGGACATCCAGGGGCCTTAAGTACCATAAATACAGTGACCCATAGGTTTAGAAGATTTCCATATGATTCAGAGGAATCATCAAGAGACTTATGTTTTATAGTGCCAGCCGAGATCCAGAAACTCAGAGTTTAGAAACTGATGCTCCATGTTGTCTGATTACACATCCCATGATGCTTTGTCCCTTGGGATTGAACAACAGTTATCTTTTTCAAGCATTCCTAAAATACATTTTGCATCTTATTAATTTCCCTTTAAAAAGATCTGTTATATGATCCACACTATAGTTCAAAAGTTTAGGGTCTGTAAGATTTGGTTTTGTTTTTTAAAGAAAATAATACTTTTATTCCACAAGGATATATTAAATTGATCAAAAGTGACAGTAAATACATTTATAATGTTATAAACTATTTCAACTAGAAATGTTTTACTTTTTAACTTTCTATTCATCAAAGAATCTTGAAAAAAAGTATCACAGTTTCTTTCCACAAAAATATTAAGCAGCATAACTGTTTTCAACTGATATTAATAATAAATGATTCTCGAGCAGCAAATCAACATATTAGGATGATTTCTGAAGGATCATGTGACACTGAAGACTGGAGTAATGATGCTGAAAATTCAGCTTTGATCACAGGAATAAATTACATTTTATACTATATTCAAAAACCTATTTTATTAAAATTATTACTGTTTTTCTGTTTTTTTGCAGCCCAAGAGCATAAGAGGCTTTTTTCAAAAACATTTTAAAAAATTTGTACCAACCCTAAACTTTTACATGGTTATCAGTTCTGAATAAATCACATGTAAATATCTGCTAACCAAATGTCAAATGTCAATCTCTCGAGCCTGACAGAACTGGCTCCACAGATGTTACTGCGGACTCTTCACTCATTAACATCTCAGTCCCCAGTAATCTCACACTATCACATATATCAGGAAAAGACAGGATGCTTGGGAAGAAAGAATGTCATGGTGAATGGTTTCACATAACTGACAAATGGCAATAGTATGCGAGAAGCAATACAAAGATCTCAAATTACTGACACTGCTTCTTTTCAATGGGAAACAATGTCCTCTATGGTTCAGGTTCGACGAGGACCATTATGACTATGATTCCACTCAAATCCCAGAGTACGACTACAATTCAACATTCGATGTCATGTTCTTCAGCAATGCCAGCCATGAAGATCTAGAGAAGTTTTTAATGGGAGGAGGGACAGACTCTGGAGAAGAAACAAGCTTTACAGAAACAGAAACAGAAACAGATGGAAGTGTACATGAACAAAAGCCCACTGAGCCCACAATCATTTTTAGGAATCAGTGTTGGAAAGTTAAACAATGGCTCTGCTCTGCATTAAAGGAAGGCATCTGGAAACAGAGGAAATGCGGAAGGAGAGGCAATGCCACAGTCAACCTTTAAGCATGCACATTTAATTAAACAAGCTACTAATTATATAAAGCCATTTGAATTCCTGTGAGAAAGCAAATGCATTACATCTGCTTTAAGAACACACAATGGAAAAATCTCAGACA

Function

NR:

description
hypothetical protein cypCar_00029095

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_01706858_01711137.mRNA True 1662 mRNA 0.35 4 1705732 1711250

Neighbor

gene id symbol gene type direction distance location
CI01000054_01650242_01665628 PLEKHO1A coding upstream 39617 1650242 ~ 1666115 (+)
CI01000054_01639395_01647833 VPS45, VPS45.S coding upstream 56852 1639395 ~ 1648954 (+)
CI01000054_01634335_01637623 NA coding upstream 67810 1634335 ~ 1637922 (+)
CI01000054_01613638_01617674 PSB4, PSMB4, PSMB4.L coding upstream 87375 1613318 ~ 1618357 (+)
CI01000054_01589927_01595736 NA coding upstream 109875 1588883 ~ 1595857 (+)
CI01000054_01725792_01726688 NA coding downstream 14377 1725627 ~ 1726793 (+)
CI01000054_01871659_01875753 NA coding downstream 160298 1871548 ~ 1876210 (+)
CI01000054_01879983_01965668 TRIO, TRIOA coding downstream 168733 1879983 ~ 1966159 (+)
CI01000054_02024879_02026284 NA coding downstream 313629 2024879 ~ 2027615 (+)
CI01000054_02096054_02105211 GNRHR1, GNRH-R coding downstream 384804 2096054 ~ 2105265 (+)
G229967 NA non-coding upstream 101127 1604324 ~ 1604605 (+)
G229815 NA non-coding upstream 119718 1585337 ~ 1586014 (+)
G229958 NA non-coding upstream 187174 1516335 ~ 1518558 (+)
G230449 NA non-coding downstream 24592 1735842 ~ 1739334 (+)
G230462 NA non-coding downstream 56173 1767423 ~ 1807305 (+)
G230463 NA non-coding downstream 146938 1858188 ~ 1971861 (+)
G230496 NA non-coding downstream 298752 2010002 ~ 2010436 (+)
G230500 NA non-coding downstream 305024 2016274 ~ 2018368 (+)
CI01000054_01578022_01579167 NA other upstream 123663 1578022 ~ 1579356 (+)
G229936 NA other upstream 298602 1397080 ~ 1407130 (+)
G229760 NA other upstream 431982 1266350 ~ 1273750 (+)
CI01000054_01227110_01229796 EEF1A1L1 other upstream 475403 1226335 ~ 1230329 (+)
CI01000054_02289802_02330591 SLC25A13 other downstream 578581 2289802 ~ 2330981 (+)
G230689 NA other downstream 1367252 3078502 ~ 3087392 (+)
CI01000054_03848427_03914231 NA other downstream 2197201 3848427 ~ 3914231 (+)
G231863 NA other downstream 2695902 4407152 ~ 4450730 (+)

Expression


Co-expression Network