CI01000054_02024879_02026284


Basic Information

Item Value
gene id CI01000054_02024879_02026284
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 2024879 ~ 2027615 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_02024879_02026284.mRNA
GTAGAACAGGAGCTTAAGTGCATGCAGTCCTTAGGGATAATCTCTGAAGTCACTGAACCAATGGAATGGTGCACTCCAATGGCGCCTGTAGCAAAAAAGAATGGTTCTGTTAGGATTTATGTTGACCTCAAACATTTGAATCAGGCTGTAAAACATGAGCACTTTATTCTCCCAACATTAGAGGATATTGCACCCAAACTCTCAGGAGCCTGTGTATATTCCACTCTGGACGCATCCTCAGGGTTTTGGCAAATCCCTTTGGACCCAAGCTGTGTGAAGTTGACCACATTCATAACTCCACTGCCGTATTTTGGCCACACAATCGGTCATGAAGAAATTAAGCCTGATGCAACTAAGGTGAAGGCAGTCACCGATATGCCGAGTCCCACTAATGTGACATATCTTAGGCAAATTCTAGGAATGGTAAATTATTTAGGCAAATTTGTGCCAGAGATTTCCAGGGAGCTCCAGCCAGTTATGGCTCTGCTGAAGAAGGATGTAATCTGGCTTTGGACAGAAATCCACGAGCAGGCTCTGGACAAAGTAAAGTGCAAGTTAGCCACAGCTCCTGCTCTTGCATATTATGGTCCTGAGAAACCCACTATGGTTACTTGGATGAATTTTGCCTGCAAAGCAAACAGACCACAAACCTTTGGTCATTATCTCATTATCTCCTATGATACTGATTATGCCCCACTATGGTATCAGTGGTTACTAACGCGCCTCATGCGCTTCAATGTGAAAGCAGTGCATGTCCTTGAGATGGAGGATGAGGCGAAGGCACATGTTGAAGCAGTCATCACATCTAAAGAGGTGTTACAATCAAAGCTAGATGCCATTAGAGAGGCCACAGAGGAAGATGCTGATCTCCAGGCAGTGATGAGCTTTCTCAGCAAGGTTTGGCCAAAGTATATACCCTTCCAGCTGGGTGGTTACTGCTAGGGCATCCTTGTCTGTTGTCAATGGGCTGCTCCTGTACGAGGACAGGATTGTCATTCCTGAGTCGATGAGGGAGGCATTAAGCCGAATTCATAAAGGGTATCAAGGTCTCTCCAAGTGCCGTCAGAGGGCAAAGATGTCAGTTTGGTGGCCTGCAATAGGTAATGACATTAACAGGAGGGTCTCAGTAGGGTGCATAACCCCACACTAAGGAAAGAACCTTTAATCACTACCCCCTTGACTGCTGGTCCCTGGTGAAAAATTGCAGCAGATTTATGCGAGTTGAATGGTAAAACTTACTTGATAGTCGTAGACAACTACTTGTGTGACATGTATCTGACAATGGCGCACACAGTTCACCTTGGCTGAATTTCGAGATTGTCCTCACTGCAGAACACGAGATCCAGGGGGCGATCCAGATCCAACTCCTCCCATTTTACATATCCCTAAACCTACCCGTCTCAACCCCCTGATCCCTAAACCTACCCATCTTCACCCCCTGGATCTGGATCCAACTCCTCCAACTTTACATATCCCTAAACCTACCTGTCTCCACCCCCTGGATCTGGATCCTGGATCTCGTGTTCTGCAGTGAGGAGCTACTGTGAATTTCAGCAGTTCAGTACAGACTACGATTTTCACCACACAACCTCAAGTCCTCATTTCCCCCAAGCCAATGGAACTGCAGAGAGAGCAGTTCAAACTGCAAAATGGATCCTCCTCCAACCTGATCCTCACATGGAACTAATGTGCTACTGAGCGACACCAATTGCTGCAAATGGACTAAGCCCTGCCCAGATAATGACAGGTCGACAGATCAGAACCAACCTGCCAATGCCTGAGGAAAAACACCAGCCTCAACCCATTGATTACAAAGCTGTGGAGAGGAAGGATAAGGCTGCAAAGGAATCCTACAAGTTCTTCTATGATCGGTGACACTCTGCTTGTGTTTTACCTGAACTTCAACCTGGGGAGAAAATTCTTCTTAAACTGGATAGTGAGAAAGGCTTGTAAACACCAGCTATGGTGCTGAACAAAACATCTGAACCAAAATCTTACGTGGTGCAAACACAGAATGGAGCTGTCCTATGCAGGAACCGTAAACATCTGCAAGCGATGCCGTTGCAACCTGATGCTACTGGGTGCAGTGAACCTCAAGGAGGGAAGAATTCAGGCCCTCCTGGTGCAGGAACTGAACATTTAAATACTCCTGAAGTTGCTTCTGCTCCACCTGTGAAGGCGCCACCAGTTTTAACTTCCAGCGGAAGAGTTGTGAAAACACCAAAATGTTACTTGGA
>TU261597
GAGGAGCTACTGTGAATTTCAGCAGTTCAGTACAGACTACGATTTTCACCACACAACCTCAAGTCCTCATTTCCCCCAAGCCAATGGAACTGCAGAGAGAGCAGTTCAAACTGCAAAATGGATCCTCCTCCAACCTGATCCTCACATGGAACTAATGTGCTACTGAGCGACACCAATTGCTGCAAATGGACTAAGCCCTGCCCAGATAATGACAGGTCGACAGATCAG
>TU261598
CAAAGCTGTGGAGAGGAAGGATAAGGCTGCAAAGGAATCCTACAAGTTCTTCTATGATCGGTGACACTCTGCTTGTGTTTTACCTGAACTTCAACCTGGGGAGAAAATTCTTCTTAAACTGGATAGTGAGAAAGGCTTGTAAACACCAGCTATGGTGCTGAACAAAACATCTGAACCAAAATCTTACGTGGTGCAAACACAGAATGGAGCTGTCCTATGCAGGAACCGTAAACATCTGCAAGCGATGCCGTTGCAACCTGATGCTACTGGGTGCAGTGAACCTCAAGGAGGGAAGAATTCAGGCCCTCCTGGTGCAGGAACTGAACATTTAAATACTCCTGAAGTTGCTTCTGCTCCACCTGTGAAGGCGCCACCAGTTTTAACTTCCAGCGGAAGAGTTGTGAAAACACCAAAATGTTACTTGGATTAAAACCAATTACTGATTAGAGTGTTGCTTTGTTC

Function

NR:

description
Zgc:153522

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_02024879_02026284.mRNA False 2237 mRNA 0.46 4 2024879 2027579
TU261597 False 228 lncRNA 0.48 1 2026875 2027102
TU261598 True 462 lncRNA 0.45 1 2027154 2027615

Neighbor

gene id symbol gene type direction distance location
CI01000054_01879983_01965668 TRIO, TRIOA coding upstream 58720 1879983 ~ 1966159 (+)
CI01000054_01871659_01875753 NA coding upstream 148669 1871548 ~ 1876210 (+)
CI01000054_01725792_01726688 NA coding upstream 298139 1725627 ~ 1726793 (+)
CI01000054_01706858_01711137 NA coding upstream 313629 1705732 ~ 1711250 (+)
CI01000054_01650242_01665628 PLEKHO1A coding upstream 358764 1650242 ~ 1666115 (+)
CI01000054_02096054_02105211 GNRHR1, GNRH-R coding downstream 68475 2096054 ~ 2105265 (+)
CI01000054_02195667_02196307 CHRAC1 coding downstream 168088 2195667 ~ 2196853 (+)
CI01000054_02225261_02226820 DLX5, DLX5A coding downstream 196948 2224527 ~ 2227071 (+)
CI01000054_02239241_02261796 NA coding downstream 210745 2238324 ~ 2261858 (+)
CI01000054_02272856_02274337 SHFM1, SHFM1.S, DSS1 coding downstream 243610 2271189 ~ 2274545 (+)
G230500 NA non-coding upstream 6511 2016274 ~ 2018368 (+)
G230496 NA non-coding upstream 14443 2010002 ~ 2010436 (+)
G230463 NA non-coding upstream 53018 1858188 ~ 1971861 (+)
G230462 NA non-coding upstream 217574 1767423 ~ 1807305 (+)
G230449 NA non-coding upstream 285545 1735842 ~ 1739334 (+)
G230475 NA non-coding downstream 54446 2082025 ~ 2082459 (+)
G230606 NA non-coding downstream 78141 2105720 ~ 2108675 (+)
G230617 NA non-coding downstream 87857 2115436 ~ 2115817 (+)
G230622 NA non-coding downstream 94742 2122321 ~ 2122664 (+)
G230624 NA non-coding downstream 96788 2124367 ~ 2124737 (+)
CI01000054_01578022_01579167 NA other upstream 442810 1578022 ~ 1579356 (+)
G229936 NA other upstream 617749 1397080 ~ 1407130 (+)
G229760 NA other upstream 751129 1266350 ~ 1273750 (+)
CI01000054_02289802_02330591 SLC25A13 other downstream 262252 2289802 ~ 2330981 (+)
G230689 NA other downstream 1050923 3078502 ~ 3087392 (+)
CI01000054_03848427_03914231 NA other downstream 1880872 3848427 ~ 3914231 (+)
G231863 NA other downstream 2379573 4407152 ~ 4450730 (+)
CI01000054_05608892_05634793 RNF19B other downstream 3595436 5608457 ~ 5634804 (+)

Expression


Co-expression Network