CI01000054_02514735_02525669 (CASD1)


Basic Information

Item Value
gene id CI01000054_02514735_02525669
gene name CASD1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 2514659 ~ 2525669 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_02514735_02525669.mRNA
ATGAAAGGTGATACAACAGCAACATCAGACTCCAATCAACGCTCGACTGCAGAAGCTGAAGCTGAGGCAGAGGCACACGCGGGAAGCGGGCACGCGCTGTTCGGCTCTGCCTTCGTCAGCTTCGCCGCAGCTCGTCTGTCTGCCTGTTGTCATGGAGGAGCCAAGATGGCGGTCCTGGCCTATAGCCTAGGCAAACGGGAAATAAATCAGTATTTCAGTATCAAAAATGCTAAATTGTTGTCTGTCGCCGCCGTCATTCTTCTCACTGTGTTTCACTCGGTTTCTCGACATTATGGAGGCAGTGACACATGTGACTGGCTTTTATCTAGTGGACGTTTTTTAGGGGATAATGTGTGGCAGCCCTATGGCTGTATGTTACACAAGTACAAAAGCACTGAAGCAAAGTTTTGCCTCAGAGAGAAGAGAATAGCTTTTGTAGGAGACTCTAGAATACGTCAGCTCTTCTATTCTTTCATCAAAATGATGAACCCGGAGGTGAAAGAAGTTGGGAACAAGCATGAAAACATCCCCTTTGTAGATGGTGATTCCACTGTGAACTTCCTGTGGTATGCAGAAGTGAACAATTCCTTGAAGGAGCAGTTGATGTTATGGACAGAGGGATCTGCTTCCAAACCACACATCATCATCATTGGTGCTGCTACGTGGTCCATTAAGTTGCACAACGGCAAGAGTGAGGCACTCTTTCAGTACAAAGCAAACCTCACGGCTATATCAGACACACTGGAAAAACTAGCTGAGCACAGTGAAGTCTATTGGGTTCTGCAAGATCCTGTTTATGAGGATGTGCTAAGTGACAGTCGAAAGATGATCACAAACGAGCAGATAAATCTGTACAACGAGGCGGCGGTTAGCACTCTAAATACCAGCAAAAAGAAGGTCAAGTTCTTGGAGGCCTCTCGGCAAGCTGCTATGGAGACCATTTCCCAGTCGGTGGATGGCCTGCACCTTCCTGAGAGCACAAGAGATGTTGGTGCCATGGTTCTGATGAACTCCATGTGCAACAAGATCCTGAAGCCCATTGACGGCTCATGCTGTCAGAGCGCTCCTCCGCTAAGCGTCCTTCAGAAGCTAGCTGCTGGCCTCTTCCTGGTGTGCATCATCTGCTTTCTCCTCCTGGGCTTTAGCAAACATAATAAGAGCAGGCCCATTCCTGATGTGGAGAGTGGAGAAGAGAAGAAACCCCCCGTTGTTATGGGTCAACTCAACCCAAAGGGTCCGCTACTGGCCATTTGCAAAATGAGCCTTATCATGTTGTACTTCTACCTGTGTGACAGGGCAGACATTTTTATGAAGGAACAGAAATTCTACACACATTCTACCTTTTTCATCCCTCTTATCTACATCTTCGTTCTGGGCATCTTCTACAATGAGAACAGCAAAGAGACAAAACTCCTGAACAGAGAGCAAACAGATGAATGGAAGGGCTGGATGCAGCTGGTTATCCTTATTTACCACATTTCTGGAGCTAGCGCTTTCATACCTGTGTACATGCATGTCCGTGTCCTGGTAGCTGCGTATCTCTTCCAAACAGGATATGGACACTTCTCATTCTTCTGGCTAAAGGGAGACTTTGGACTTTACAGAGTGTGTCAGGTTCTCTTCAGGCTTAACTTCCTTGTGGTGGTGCTGTGTCTGGTTATGGACAGGCCTTATCAGTTCTATTACTTCGTGCCTCTTGTCACCTTTTGGTTTGCAGTTATTTATGCCACAATGGCTTTGTGGCCACAGATTCTTCAGAAGCAAGCCAATGGTAGTGCATTCTGGAATCTGGCACTTCTGTTGAAACTTCTGGTTTTGCTGTTTTTCATCTGCTTCTTTGCGTACTCACAAGCTGTGATCAATGGGATGCTCTTTGCCTTCATATACCTGCTGCTTCAGAAATGTCAGTTGCTCTCTGAAGGCAAAGGAGAGCCTCTCTTCTCCAACAAGATTTCCAACTGTCTGCTCTTCGTCTCTGTGGTTTCTTTTATTATTCTGGCTTTCATTTTGATCCGGAATATTCCTGGTTACGCTCGCTCTTTGTACAGTTCATTCTTTGCATGGTTTGGAAAGATCTCCCTAGAGCTCTTCATATGCCAGTATCATATTTGGCTGGCAGCGGACACCAAGGGCATCCTGGTCCTCATTCCAGGAAACCCCACCTTAAACATTATCGTCAGCACATTCATCTTCGTCTGTGTAGCTCATGAGATCTCCCAGATCACCAATGACTTGGCCCAGGTGGCCATTCCTAAAGAGAGCGGGCCTCTGCTGAAGAGACTGCTGGGGGCAGGAGTCTTTCTAGTGCTGGTACTGATACTGTCCCAAAACGAGTAATTCAGGGCAATCAGAGACAGTAGCACACCTCATCCGGTGAGGATTCTAATGGATCTGTGTGTATAAAACAAATAAA

Function

symbol description
casd1 Predicted to enable N-acetylneuraminate 7-O(or 9-O)-acetyltransferase activity. Predicted to be involved in carbohydrate metabolic process. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane. Orthologous to human CASD1 (CAS1 domain containing 1).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_02514735_02525669.mRNA True 2413 mRNA 0.47 16 2514659 2525669

Neighbor

gene id symbol gene type direction distance location
CI01000054_02491166_02492438 NA coding downstream 22221 2491065 ~ 2492438 (-)
CI01000054_02486241_02489469 NA coding downstream 24965 2485602 ~ 2489694 (-)
CI01000054_02439354_02469735 PPP1R9A coding downstream 44924 2439354 ~ 2469735 (-)
CI01000054_02434020_02435538 NA coding downstream 79121 2433272 ~ 2435538 (-)
CI01000054_02333324_02413943 DYNC1I1 coding downstream 99682 2333309 ~ 2414977 (-)
CI01000054_02529145_02537881 COL1A2 coding upstream 3236 2528905 ~ 2537881 (-)
CI01000054_02593560_02610677 NA coding upstream 67891 2593560 ~ 2610677 (-)
CI01000054_02611877_02612240 GNGT1 coding upstream 86003 2611672 ~ 2612394 (-)
CI01000054_02709494_02814598 VPS50 coding upstream 183820 2709489 ~ 2814900 (-)
CI01000054_02825786_02828251 NA coding upstream 300084 2825753 ~ 2828251 (-)
G230897 NA non-coding downstream 287554 2225164 ~ 2227105 (-)
G230888 NA non-coding downstream 392096 2122228 ~ 2122563 (-)
G230886 NA non-coding downstream 394328 2120077 ~ 2120331 (-)
G230885 NA non-coding downstream 401932 2112451 ~ 2112727 (-)
G230883 NA non-coding downstream 406057 2105736 ~ 2108602 (-)
G230961 NA non-coding upstream 21467 2547136 ~ 2547358 (-)
G230962 NA non-coding upstream 22025 2547694 ~ 2547909 (-)
G230963 NA non-coding upstream 24308 2549977 ~ 2550344 (-)
G230964 NA non-coding upstream 25758 2551427 ~ 2551643 (-)
G230965 NA non-coding upstream 27815 2553484 ~ 2553943 (-)
G230178 NA other downstream 1284524 1185533 ~ 1230135 (-)
G230923 NA other upstream 311568 2837237 ~ 2837682 (-)
CI01000054_02857402_02860451 NA other upstream 328472 2857402 ~ 2860573 (-)
G230908 NA other upstream 531979 3057648 ~ 3063343 (-)
G231645 NA other upstream 1456178 3981847 ~ 3982823 (-)
CI01000054_04671351_04681181 PEF1 other upstream 2144482 4670151 ~ 4681361 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014240 casd1 coding NC_007130.7 CM002903.2 41006975 ~ 41034224 (+)
bowfin (Amia calva) AMCG00021536 NA coding CM030130.1 CM030130.1 20829853 ~ 20842424 (+)