CI01000054_02529145_02537881 (COL1A2)


Basic Information

Item Value
gene id CI01000054_02529145_02537881
gene name COL1A2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 2528905 ~ 2537881 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_02529145_02537881.mRNA
ATGTACATTTATGTTTCCTGCAGGGAGCTGCTGGTACTCGTGGTCTGCCTGGTCTGGCTGGAAGATCGGGCCCAATGGGCATGCCTGGTGCCCGTGGTGCCACTGGTGCCCCTGGAGCCCGTGGACCTCCTGGAGATGCTGGTCGTGCTGGGTCTCCCTGGTAGCCCTGGCAGTTCTGGACCCCCTGGAAAGGAAGGACCTGCTGGTCCCGCTGGTCAAGATGGTCGCTCTGGCCCCCCTGGACCAACTGGACCCAGAGGCCAGCCTGGTAATATTGGATTCCCCGGTCCTAAGGGACCTTCTGGCGAGCCTGGCAAGCCTGGTGAGAAGGGACCTGCTGGCCCAACTGGACTGAGAGGTCAACCTGGTCCTGATGGTAACAACGGCCCTGCTGGTCCCGTCGGACTTGCTGGTGCCCCAGGTGAGAAAGGAGAGCAGGGACCCTCTGGTGCTCCTGGTTTCCAGGGTCTTCCTGGCCCCGCTGGACCCGTTGGTGAGGCTGGCAAGCCCGGAGATAGAGGTATCCCTGGAGATCAAGGTGCATCAGGACCTGCTGGCGTGAAGGGAGAGCGTGGTAACCCTGGACCCGCTGGTGCTGCTGGCGCTCAGGGACCCATTGGGGCTCGTGGCCCTTCTGGTACTCCTGGCCCTGATGGAAACAAGGGAGAGCCTGGTGCAGTTGGAGCTGCTGGTGCCCCTGGACACCAGGGAGCTGCTGGCATGCCTGGTGAGCGTGGTGCTGCTGGCACCCCTGGACCTAAGGGAGAGAAGGGTGAACAAGGATACAGAGGACTAGAGGGCAACGCTGGAAGAGATGGTGCCCGTGGTGCTCCTGGACCCAGTGGACCCCCTGGACCCGCAGGTGCTAATGGTGACAAGGGTGAGACTGGCTCCTTCGGTCCTCCTGGACCAGCTGGTGCTCGTGGTGCTCCTGGGGAGCGTGGTGAGTCTGGCCCTGCTGGACCTTCCGGTTTTGCTGGACCCCCTGGTGCTGATGGCCAGACTGGACAAAGAGGTGAGAAAGGACCTGCTGGTGTAAAGGGAGACGCTGGACCTCCTGGCCCTGCTGGTCCCGCTGGCAATACTGGACCCCTCGGTCCTTCTGGTCCTGTTGGCCCACCTGGTGCCCGTGGTGACAGTGGTCCCCCTGGTCTGACTGGCTTCCCTGGTGCTGCTGGCAGAGTTGGACCTCCTGGTCCTTCTGGTATTGTTGGACCTGCTGGTCCCACTGGTGCTCCTGGAAAGGATGGCCCACGTGGTGCTCGTGGTGATGTTGGCCCTGCTGGTCCCCCAGGAGAGAATGGAATTATTGGACCCCCAGGTCTGGCTGGTGAGAAGGGATCTCCTGGAGAGTCTGGCGCACCTGGAGCACCTGGACTTGCTGGGCCTCAGGGTCAGCTGGGATCTCAGGGATTCAATGGTCTTCCTGGCTCCAGAGGTGACCGTGGTCTTCCTGGTGGCCCCGGTGCTGTTGTAAGTGCACTGAACAACGTCCTAATTGTGTCCGGTCAGGGTGATGCTGGAAGAGTTGGCCCTGCTGGTGCCCCTGGTTCCCGTGGTCCCGCTGGTAACATTGGCATGCCCGGTATGACTGGTCCTCAGGGTGAGGCTGGACGTGAGGGAAGCCCTGGTAATGATGGACCTCCTGGCCGTCCTGGTGCTGCTGGCCTTAAGGGACCTTCTGGTTCTTCTGGCCCTGTTGGACCTGCTGGAGCAAGAGGTGCACCTGGCCCTGCTGGACCTCGTGGTGAGAAGGGTGTTGCTGGAGACAAAGGAGAAAGGGGCATGAAGGGACTTCGTGGACATCCTGGTCTGCAGGGAATGCCCGGACCCAGTGGTCCTTCTGGTGACAGTGGCGCTGCTGGTATTGCTGGTCCTGCTGGTCCAAGAGGCCCAGCTGGTCCTAATGGTCCCCCTGGTAAGGATGGTTCAAATGGCATGCCTGGTGCTATTGGACCCCCTGGACACCGTGGTCCTCCTGGTTATGTTGGACCTGCTGGTCCTCCTGGAACTCCTGGTCTTCCCGGACCCCCTGGCCAAGCTGGTGGTGGATATGACACATCTGGTGGCTATGATGAGTACAGAGCTGACCAGGCCTCTCTCAGGGCCAAGGATTATGAGGTGGATGCCACCATCAAGTCCTTGAACACTCAGATTGAGAATCTGCTTTCCCCTGAGGGCTCAAAGAAGAACCCTGCTCGTACCTGCCGCGACATCAGGCTGAGTCACCCAGAATGGAGCAGCGGATTCTACTGGATCGACCCCAACCAGGGCTGCACCATGGATGCCATCAAGGCTTACTGCGACTTTTCTACTGGACAGACCTGCATCCACCCCCACCCCGAGAGCATCCCACAAAAGAACTGGTACAGAAGCTCCCAGGAGAAGAAACACATTTGGTTTGGCGAGACCATCAATGGTGGTACTGAGTTTTCTTACAATGATGAGACCCTGAGCCCACAGTCCATGGCTACTCAGCTGGCCTTCATGCGCCTGCTGGCTAACCAGGCAGTCCAGAACATCACCTACCACTGCAAGAACAGCATCGCCTACATGGATGCTGAGAATGGAAACCTGAAGAAGGCTGTGTTGCTGCAGGGCTCCAACGATGTGGAGCTCAGGGCGGAGGGCAACAGCCGCTTCACGTTCAGCGTCCTAGAGGATGGCTGCAGTAGACACACTGGCCAGTGGAGCAAGACAGTCATTGAATACAGAACGAATAAACCATCTCGCCTTCCCATCCTCGACATTGCACCTTTGGACATTGGTGGCGCAGATCAAGAGTTTGGTTTGGACATTGGCCCAGTCTGTTTCAAATAAATAGACTCATGATAAATTAAACAAGAGAAAGAAAGAAAAAAGAAAAATCTCTGCCCTTCTTTCTGTGTTTTTTTATACTGAATGCTGATTTTTTCTGCAAATCCACTTGCTTAAGCTGGGCTCTATCGGAGAGGACCAATGGACTGAACGGAGCATTGCGCAATGCAAATTAATACAGCAGCCCAAAGAGACGCGGGATAACACCATGTTATGGGACATGTCATCATTTTGTAAAATAAA

Function

symbol description
col1a2 Predicted to be an extracellular matrix structural constituent. Acts upstream of or within response to mechanical stimulus and skeletal system development. Predicted to be located in extracellular region. Predicted to be part of collagen type I trimer. Predicted to be active in extracellular matrix and extracellular space. Is expressed in several structures, including cranium; integument; myoseptum; osteoblast; and pectoral fin. Used to study Ehlers-Danlos syndrome and osteogenesis imperfecta. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome (multiple); heart valve disease; intracranial aneurysm; osteogenesis imperfecta (multiple); and osteoporosis. Orthologous to human COL1A2 (collagen type I alpha 2 chain).

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
K06236 COL1A; collagen type I alpha

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_02529145_02537881.mRNA True 3060 mRNA 0.58 30 2528905 2537881

Neighbor

gene id symbol gene type direction distance location
CI01000054_02514735_02525669 CASD1 coding downstream 3236 2514659 ~ 2525669 (-)
CI01000054_02491166_02492438 NA coding downstream 36467 2491065 ~ 2492438 (-)
CI01000054_02486241_02489469 NA coding downstream 39211 2485602 ~ 2489694 (-)
CI01000054_02439354_02469735 PPP1R9A coding downstream 59170 2439354 ~ 2469735 (-)
CI01000054_02434020_02435538 NA coding downstream 93367 2433272 ~ 2435538 (-)
CI01000054_02593560_02610677 NA coding upstream 55679 2593560 ~ 2610677 (-)
CI01000054_02611877_02612240 GNGT1 coding upstream 73791 2611672 ~ 2612394 (-)
CI01000054_02709494_02814598 VPS50 coding upstream 171608 2709489 ~ 2814900 (-)
CI01000054_02825786_02828251 NA coding upstream 287872 2825753 ~ 2828251 (-)
CI01000054_02840361_02849268 NA coding upstream 301951 2839832 ~ 2849268 (-)
G230897 NA non-coding downstream 301800 2225164 ~ 2227105 (-)
G230888 NA non-coding downstream 406342 2122228 ~ 2122563 (-)
G230886 NA non-coding downstream 408574 2120077 ~ 2120331 (-)
G230885 NA non-coding downstream 416178 2112451 ~ 2112727 (-)
G230883 NA non-coding downstream 420303 2105736 ~ 2108602 (-)
G230961 NA non-coding upstream 9255 2547136 ~ 2547358 (-)
G230962 NA non-coding upstream 9813 2547694 ~ 2547909 (-)
G230963 NA non-coding upstream 12096 2549977 ~ 2550344 (-)
G230964 NA non-coding upstream 13546 2551427 ~ 2551643 (-)
G230965 NA non-coding upstream 15603 2553484 ~ 2553943 (-)
G230178 NA other downstream 1298770 1185533 ~ 1230135 (-)
G230923 NA other upstream 299356 2837237 ~ 2837682 (-)
CI01000054_02857402_02860451 NA other upstream 316260 2857402 ~ 2860573 (-)
G230908 NA other upstream 519767 3057648 ~ 3063343 (-)
G231645 NA other upstream 1443966 3981847 ~ 3982823 (-)
CI01000054_04671351_04681181 PEF1 other upstream 2132270 4670151 ~ 4681361 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014239 col1a2 coding NC_007130.7 CM002903.2 40983221 ~ 41002980 (+)
bowfin (Amia calva) AMCG00021537 col1a2,LOC107722140,LOC107667770,LOC107591591,LOC107731699 coding CM030130.1 CM030130.1 20797698 ~ 20827291 (+)