CI01000054_03082593_03087260 (SFPQ)


Basic Information

Item Value
gene id CI01000054_03082593_03087260
gene name SFPQ
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 3082348 ~ 3087545 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_03082593_03087260.mRNA
ACTCACTCAGTAATGGTTGAACTCACGAGCGCCACTAGAGGGCGCCAGTACCCCTTTGGACCGCTTGGATTTGATTTGGGGCGGAGGCTCTTGAGCGCGTCATTCCTCCCATTTCTACGATCTTCTCACGCAACCAACGGCCATTTTACAAAGCAAGCGTTGAGAGTGCAGGTTATCCACTCCTCGTCGGCATTTATCGTTAGTTTTGAATATAGTGCGTTATTTAACCTGATCTATCACCCTCAAAAGGCTTTTTAAACTGTTTTTCTGTCCGCTTGTGTGAAAATGTCTCGTGACCGCTCCCGTAACCGTGGAGGATTCCAGCACCGAGGCCGCGGAGGAATGGGAATGCGTGGTGGAATGGGAAACCCTAACTTTAGAAATCAAAACCAGCATCCTTATCAAAACCGAGGACCCCATATGGGTGGCGGATTTAAGCCGAATCAGGGAAATCAGCCCAGCCAGGCCTCTACACCACAGAAGCCGCAGGAATCCAGTCAGAACAAGCCAGTGGTCCAGTCACCTCCGGCGCAAGGCCCTGGTCTGGCCCAGCAGAGCAACAACAAAGGCCCTTCGCCACAGCAGACCGCCATCGCTGCTCCGCCGCAGATCCAGTCCCCACCGCCACAAAAGATCCAGTCCCCACCTCCACAGAAGATCCAGTCTCCACCGCCACAGAATAATGCGAAGAACCCAGACCTCGGTTCCCCACAGAACCAGCTCAGAAAAAACCAACCAAAAGGTGGGATGGGGAATGGTCAAAAACCAAATGTTCCCGTGCAGAAAGAACCGGAAAAGACAGTACCACCGCAACAACAGAGCACCACGAGCAATGAGGGCATTCAGCCTCAGGAGTTGAAGGCAACGCTATCTTTGCTGCGCAAGCCTGGAGAGAAAACCTATACTCAGCGTTGTCGTCTGTTTATTGGGAACCTACCAAACGACATCACTGAACCCGAATTCAGGAAATTGTTTGCAAAGTATGGGGAGCCCAGTGAGATTTTCATCAATCAAAGCAAAGGTTTTGGATTCATCAGACTGGAATCCCGTGCCTTGGCAGAGGTTGCAAAAGCTGAGCTGGATGATATTCCCATGAAAGGCAGGCCTCTCAGAGTTCGTTTTGCCACTCATTCTGCTGCACTTTCTGTGCGCAACTTATCTCCATTTGTGTCCAATGAACTGCTGGAAGAGGCCTTCTCTCAGTTTGGAGTGGTGGAGAGGGCTGTAGTTATTGTAGATGACCGTGGCCGCTCAACAGGGAAAGGCATTGTTGAGTTTTCTTCCAAACCAGCTGCACGGAAGGCTATTGATCGTATCAGTGATGGAGTGTTCCTTCTCACATCGTCACCCCGTCCAATTGTGGTTGAATTGTTAGAGCAATATGATGATGAGGATGGTTTGCCAGAGAAGCTTGCACAGAAGAACCCCAGTTATCAGAAGGAGCGAGATCAGCCTCCTCGGTTCGCCCGTCCTGGCACCTTTGAGTTTGAATACTCCCAGCGATGGAAGTCCCTTGATGAGATGGAGAAACAACAGAGGCAGCAAGTGGAGAAAAACATTCGTGAGGCCCGTGAGAAGCTAGAAGCAGAGATGGAAGATGCTTATCATGAGCATCAAGCAAACATGCTCAGACAGGACCTTCTTAGACGTCAAGAGGAACTTCGTCGTATGGAAGAAATGCACAGTCAGGAGATGCAGAAACGTAAAGAAATGCAACTCAGGCAGGAAGAGGAACGCCGCAGGAGAGAGGAGGAGATGATGCGGCAGAGGGAAATTGAAGATCAGATGAGGCGCAAACGTGAGGAGTCTTACAGAATGGGTGGCTTTATGGATAATGAACTGAGGCCATTTTGTGTTTGAAGGTTTATAAGTTAGGTGTGGATGGATCATTTGTAGACCCGTCAGTGGGAAGTGTGTTTTGATCCCTGTTGTTGTTTGATTGTAATCCCTCCATCTAGTGGCAGAGGTTGTTGTCAGCACTCAAGCTCAGCTCCCCTCACTTTCCTTCTCTTGTTGCTTTGCAAGTCTGTCTGTACTAAGGCCCAAGAATTTTATACACCTGCTTACAACATGAACTTGTAAGTCCTGTCTAAATTGCAAATAAA

Function

symbol description
sfpq Predicted to enable RNA binding activity. Acts upstream of or within central nervous system development and negative regulation of axon regeneration. Located in neuron projection and nucleus. Is expressed in brain; eye; gut; heart; and muscle cell. Orthologous to human SFPQ (splicing factor proline and glutamine rich).

GO:

id name namespace
GO:0031012 extracellular matrix cellular_component

KEGG:

id description
K13219 SFPQ, PSF; splicing factor, proline- and glutamine-rich

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_03082593_03087260.mRNA True 2105 mRNA 0.49 8 3082348 3087545

Neighbor

gene id symbol gene type direction distance location
CI01000054_03049995_03054032 NA coding downstream 28316 3049864 ~ 3054032 (-)
CI01000054_03032517_03047094 ZMYM4 coding downstream 35254 3031826 ~ 3047094 (-)
CI01000054_03018229_03030984 NA coding downstream 51364 3018076 ~ 3030984 (-)
CI01000054_02999099_03015534 NA coding downstream 66814 2998780 ~ 3015534 (-)
CI01000054_02985381_02988122 NA coding downstream 94187 2985360 ~ 2988161 (-)
CI01000054_03485424_03500327 NA coding upstream 397283 3484828 ~ 3500489 (-)
CI01000054_03918853_03925416 NA coding upstream 830853 3918398 ~ 3925416 (-)
CI01000054_03964701_03964965 NA coding upstream 877145 3964690 ~ 3964965 (-)
CI01000054_03998494_04025965 NA coding upstream 910873 3998418 ~ 4026082 (-)
CI01000054_04067809_04076131 NA coding upstream 980254 4067799 ~ 4076762 (-)
G231003 NA non-coding downstream 25408 3056728 ~ 3056940 (-)
G230910 NA non-coding downstream 38504 2950781 ~ 3043844 (-)
G230922 NA non-coding downstream 102894 2918027 ~ 2979454 (-)
G231001 NA non-coding downstream 164551 2917235 ~ 2917797 (-)
G230913 NA non-coding downstream 215708 2863400 ~ 2866640 (-)
G231004 NA non-coding upstream 2439 3089984 ~ 3090270 (-)
G231010 NA non-coding upstream 28630 3116175 ~ 3116434 (-)
G231016 NA non-coding upstream 51775 3139320 ~ 3139613 (-)
G231096 NA non-coding upstream 124511 3212056 ~ 3258021 (-)
G231144 NA non-coding upstream 220527 3308072 ~ 3308359 (-)
G230908 NA other downstream 19005 3057648 ~ 3063343 (-)
CI01000054_02857402_02860451 NA other downstream 221775 2857402 ~ 2860573 (-)
G230923 NA other downstream 244666 2837237 ~ 2837682 (-)
G230178 NA other downstream 1852213 1185533 ~ 1230135 (-)
G231645 NA other upstream 894302 3981847 ~ 3982823 (-)
CI01000054_04671351_04681181 PEF1 other upstream 1582606 4670151 ~ 4681361 (-)
G232274 NA other upstream 2118654 5206199 ~ 5209240 (-)
CI01000054_06629482_06641861 TRIQK other upstream 3540537 6628082 ~ 6642160 (-)
CI01000054_07165957_07169539 HEYL other upstream 4077890 7165435 ~ 7169539 (-)

Expression


Co-expression Network