CI01000054_03848427_03914231


Basic Information

Item Value
gene id CI01000054_03848427_03914231
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 3848427 ~ 3914231 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_03848427_03914231.mRNA
GTCAGCTGCCCGTCCATACAGGTAGAAGACTGGAAGTTTCCTCAAACTGCCAGACACAACATTACAGGTTTCAATCTGGCGCGTCGTTTCTCCCTGCTGAAGAACAGCGAGGTCAAGAAAATCCGAAATCCGAGAGGGCCTGTCATCCTTCGGCTTGGGAAAGTCCAACTCATCCAACCTACAGATCAAGTGTTTCCTCATGGACTTCCAGAGGAGTTCACCCTGGTCTTCACCATGTTGCTGAAGAAGAAATCTTTGAATGATAACATTTACCTGTTCCAGATCTCAGATGAGCACGGGTATCCTCAGTTCTCACTGGACTGGAATGGTCCAGATGGCAACCTGGCCCTGCGGGCAAGAGGGGCCGACTCTGAAGGGCCCATGGTGGGATGCGTGTTCGACGGTGAGGGTGTGGAATCCCTGAAGGACATGCGCTGGCATAAGGTGGCTCTGAGCCTGCAAAGTAATGCGGCCTCCTTGCACGTGGACTGCAGCTCCATCGAGAACAAGCCTCTGGAGCTCCGTGGTCAATTGCCCATCAATGGACACACGCTGTTGGGTATGAGGGCTACTGATGCTGCCCCTGTGGAGATTGACGTTCAGCAAGTGATGGTGTATTGTGACCCCACTCTGGCTATCCAGGAGGCCTGCTGTGAGATACCTGGAGCTCGGTGCCCACCAGATGCTCCCAAGAGTCGACGAGCTGCAGAGAACCAGGTGGAGTTTGTGCCCAATCCCTTCTCTGAGGCAATCCTCGGATCCAAGGAACTGGCAGAAAAATGTGCAGGCTGTGTACTGCTCAGTGAGGAATCGAGTGTTATCCAAGAGGGCTATACGGGTCAGTCAGGCCTCAAAGGAGAGAAGGGAGACCGGGGTTTGGACTGTACTGGTGCTGGAGTTCCTGGACGATGCTTAGAAGGTGCTAAAGGAGCGAAAGGAGAGAAGGGAGAGTCGGGTCTGGCTGCCAACTGGGGGGAAGCAATAGGAGTGAAGGGGGACAAAGGGCAGAAAGGAGAAACCGGAGCCCCCGGAAGTCCAGGCACAGATGGTCGAGCTAATCCTATTTGTGTGGTGGGCCCTAAAGGACAAAAGGGTGTTCCTGGTGTAGTCGGACCAGAGGGGCTTGCAGGGGAACCAGGCCGCCCAGGCCTTCCTGGACTGCCCGGGGTTGGGATACCAGGACCACCGGGGCCCCCTGGTGGACCTCCAGGATCTAAAGGGGAGAAAGGGAATTCTGGAACACCTGGTGAAGACGGAAAGCCTGGAGAACCTGGTCCGAGAGGTCCTTGGGGACCTAAAGGCGAGAAGGGAGAATCGTGTGAGCCATGTTCAGCGAAGTCTGGCGACACTGTGCCACAGAGCATGCAGGGGCCTAAAGGAGAACCAGGGGCCCCAGGCAAAGGAGAACATGGCCCACCTGTGACTACTTTTACAAACTGTCTTACACATTGTAATTCACAGGGGGACCCAGGAGCTGATGGGGCCAAAGGTGAAAAGGGTGAACCATGTTCCGGCTGCCCTACCAATGGAGAGATTCCAGCAGGACTTTTGAATCTAAAGGGAGAGAAGGGAGCTTCAGGGCAGAAAGGAGAGCAGGGAGAACCAGGCCCAAGTGGCTTTGCTGGACTAAAAGGGGAAAAGGGAATTGCGGGCAGCAGAGGAAATGAGGGAAAAACGGGCAAACCTGGTCCAAGAGGGCCAAGTGGGAAAGATGGAAATAAAGGAGCCAAGGGTGATTCTGGCCAACCTGGTTTAGGGACACCTGGTCTGAAAGGTGAAAAGGGAGACTCATGTGGTGTGTGCCAAACCACTGTCTCTGAGATGGGAAGTGGCCCAGCTACGATAAAGGTCGCAGGGGAACGAGGTCCTCCAGGACCACCAGGCCCTCCAGGAGAAGGAGTTGAGGGCAAACAGGGGCCACCAGGTCTTCAAGGTTTCAAAGGAGAGAAAGGTGATCAGGGTTTACAGGGAGACCCAGGTGTGTCTGGGACACCTGGAGTCCCAGGACTTCAAGGAGAGCCAGGCAGGAACGGCCTTAATGGACTAAAAGGAGAAAAGGGAGATGCATGTGACAGCTGTCAATCACTCCCTGAAGGAAACGGCAATGTTGCTGGCTTACCAGGACCCAAGGGAGAGAGAGGAGAGCCAGGTTTGCCAGGCGAGGGCAGAGAAGGGAAACAGGGACGACCAGGCCCACCTGGTGTCCAGGGACCTCCAGGGCTCAAAGGAAGTCAGGGTGATGCTGGGCCTGCAGGTATTGGCCTTCCAGGACTGCAGGGTGAGCAGGGACCTAGAGGTTTTCCTGGAGCTGCTGGTCCAGAAGGACGTCAAGGACCCACAGGGCCAATTGGACCAGCAGGACAAAGGGGTCCAAAAGGAGAGATGGGACCACCAGGGCCACAAGGGCCAATGGGAATGGGACAAATCGGACCTCCGGGTAGGGATGGTACGACAGGATCGCCTGGAATACCAGGGCAGGATGGGAGTCCTGGAGTCACTGGGCCTAAGGGTGACAAGGGTGAACCAGGAGAGTGCAACTGTTTGCAATATACGTCCCCTGGAACTGGCGGACCTGGGGTCCCAGGTGGTGAGAGCAGGTGGCAGCCCGGTCCTCAGGGTCCTCCTGGACCACCAGGCCCTCCAGGTCCCCCAGGGCCGCAGGGCTTCGTAGGAATCCCAGGCCCACAGGGTATCCCTGGCAACGATGGCGTACCAGGGAAACCGGGTCCCCCCGGCCAAGCAGTGAGTAACCAGACAGGGGGAGGAGCTAGTGGAGAGGGCTGTGGCGAATGCTCCAAGGGCCTACCAGGTGTGCCCGGCATGGTGGGCTCTAAGGGCGAGAAGGGAGATCAGGGCAGGCCTGGCGCTGTGCCCTTAGAAGGATGTGAACGGTGTTTTCAGTCGGTGCAGAGAGAGGAAACACCAAGCGGGCCTACAGGTAACAGCGGTCAGTGTGTTGGTGCACCAGGGATTCCCGGATACCCAGGAACCCCAGGAGCCAAAGGAGAACCGGGTCCCAGAGGTGAGCGAGGACCCCCTGGTCTTGTTGGAACCCCGGGCAATATTGGTTTCCCTGGTGCTCAAGGACCCCCTGGCCTGACTGGTCAACAAGGTCAGAGAGGCACAGATGGGCTTCCAGGACAGAAAGGTGAACAGGGTTCACCAGGAAATCCTGGCTATCCTGGCACTATGGGACCACCTGGACTCCCTGGACTTAAAGGAGAGCGTGGCAGTCCAGGCACTGTGGGGCAGAAAGGAGAATCAGGTCCACCGGGATCTCCGGGTTATCAAGGACCGGCTGGCCCAGCAGGTCCTAAAGGGGAAGCTGGAACATCAGGACCCGTGGGACCAAAGGGAGATCAGGGCTTCCAAGGATCCCAAGGATTCCCAGGACAACAGGGTCCTCCAGGTTTTCCGGGAAAAGCAGGTCCTCCGGGCCCACCAGGACCACAGGCTGAGAAAGCAAGTGACACTCAGGGCTCACAGGGACCCACAGGTCCCCCAGGATCACCCGGGTCCCCAGGCATGCCTGGACCACCTGGAATGGAAGGACTAGATGGCAAAGATGGAAAACCAGGTTTAAGGGGAGATAGAGGACCTCAGGGACCAGCTGGAGCAACAGGAAGGCCTGGTCTAGAGGGTGATCCTGGTTCTCCTGGACCTCAAGGACCACCTGGAGCTCCAGGACATGTGGGTGCTGCCGGATCTTCAGGGCCACCGGGACCAGTTGGGGCACCTGGAGTGGGCATTAAGGGAGAAAAAGGTGAGGCGGGAGAGAGAGGACTGGCTGGATTACCTGGTCCACCAGGGATGCCAGGTCATCCAGGGCAGATGGGTGAACCAGGAAGTGATGGAGCGGCGGGTAAAGACGGAGCCCCAGGCCTGCCAGGAGAACCTGGTCTTCAGGGACCGAAGGGTGAAGCAGGGGCTGCAGGGCAAAGGGGACCCCCCGGAGAGCGCGGCCGTCCCGGCCCACCAGGCGGAGGCTTTGGTTTTGGCTCAAAAGGACCAGAAGGGATCATAGGACCAGCCGGACCCCGTGGCGAAAGAGGAAGCCCCGGTTCACCTGGACCAGCTGGTTCCCCCGGAACACCAGGAATCCCAGGCAATGATGGTCCCCCGGGGATGCCGGGCCGCCCTGGGCAGATCGGCCGTGAAGGAAGGCAGGGACCCATGGGTCCACATGGTACTCCTGGTGTAAAGGGAGAGAAAGGAGATAAGGGTGTAGGAGAGATGGGAGACAGTGGCCCTCCGGGTGCTCCAGGTGTTCCTGGTCCTCCTGGTTATGGTAAGATGGGACCACCAGGTCCTTCAGGTCAGCAGGGCATTCCCGGAATTCCTGGACCTCCAGGACCCTCTGGACAGAAGGGCAAGGATGGCCGTTGTCACCCGTCAGACTGCATGAGTATGCCTGTGGAGTACAATCCCAAGGGCCCGTCTCCCAAAGGTCCCATGTAC
>TU262576
GGAGATAGAGGACCTCAGGGACCAGCTGGAGCAACAGGAAGGCCTGGTCTAGAGGGTGATCCTGGTTCTCCTGGACCTCAAGGACCACCTGGAGCTCCAGGACATGTGGGTGCTGCCGGATCTTCAGGGCCACCGGGACCAGTTGGGGCACCTGGAGTGGGCATTAAGGGAGAAAAAGGTGAGGCGGGAGAGAGAGGACTGGCTGGATTACCTGGTCCACCAGGGATGCCAGGTCATCCAGGGCAGATGGGTGAACCAGGAAGTGATGGAGCGGCGGGTAAAGACGGAGCCCCAGGCCTGCCAGGAGAACCTGGTCTTCAGGGACCGAAGGGTGAAGCAGGGGCTGCAGGGCAAAGGGGACCCCCCGGAGAGCGCGGCCGTCCCGGCCCACCAGGCGGAGGCTTTGGTTTTGGCTCAAAAGGACCAGAAGGGATCATAGGACCAGCCGGACCCCGTGGCGAAAGAGGAAGCCCCGGTTCACCTGGACCAGCTGGTTCCCCCGGAACACCAGGAATCCCAGGCAATGATGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_03848427_03914231.mRNA False 4458 mRNA 0.58 64 3848427 3914231
TU262576 True 532 TUCP 0.63 7 3908451 3913546

Neighbor

gene id symbol gene type direction distance location
CI01000054_03707961_03761024 ADGRB2 coding upstream 87315 3707835 ~ 3761112 (+)
CI01000054_03670684_03671857 NA coding upstream 176424 3670684 ~ 3672003 (+)
CI01000054_03558982_03663042 ADGRB2 coding upstream 185385 3558982 ~ 3663042 (+)
CI01000054_03424472_03425704 NA coding upstream 421994 3423054 ~ 3426433 (+)
CI01000054_03016199_03016501 NA coding upstream 831734 3015959 ~ 3016693 (+)
CI01000054_03955331_03962388 NA coding downstream 41100 3955331 ~ 3962395 (+)
CI01000054_04248925_04249335 NA coding downstream 334128 4248359 ~ 4249587 (+)
CI01000054_04372172_04374454 NA coding downstream 457194 4371425 ~ 4374901 (+)
CI01000054_04453321_04456780 ILF2, ILF2.L coding downstream 539090 4453321 ~ 4457108 (+)
CI01000054_04658039_04659082 NA coding downstream 743760 4657991 ~ 4659701 (+)
G231350 NA non-coding upstream 15822 3832302 ~ 3832605 (+)
G231295 NA non-coding upstream 395877 3452331 ~ 3452550 (+)
G231294 NA non-coding upstream 396769 3451391 ~ 3451658 (+)
G231293 NA non-coding upstream 398186 3449780 ~ 3450241 (+)
G231286 NA non-coding upstream 414845 3433308 ~ 3433582 (+)
G231353 NA non-coding downstream 618 3914849 ~ 3916392 (+)
G231691 NA non-coding downstream 177373 4091604 ~ 4092027 (+)
G231811 NA non-coding downstream 302649 4216880 ~ 4217152 (+)
G231813 NA non-coding downstream 309793 4224024 ~ 4231593 (+)
G230689 NA other upstream 761035 3078502 ~ 3087392 (+)
CI01000054_02289802_02330591 SLC25A13 other upstream 1544045 2289802 ~ 2330981 (+)
CI01000054_01725792_01726688 NA other upstream 2121634 1725627 ~ 1726793 (+)
CI01000054_01650242_01665628 PLEKHO1A other upstream 2186862 1650242 ~ 1666115 (+)
CI01000054_01578022_01579167 NA other upstream 2266358 1578022 ~ 1579356 (+)
G231863 NA other downstream 492921 4407152 ~ 4450730 (+)
CI01000054_05608892_05634793 RNF19B other downstream 1708784 5608457 ~ 5634804 (+)
G232558 NA other downstream 2079429 5993660 ~ 6041863 (+)
CI01000054_06305908_06312122 NA other downstream 2390076 6305908 ~ 6312163 (+)
G232659 NA other downstream 2460619 6374850 ~ 6375894 (+)

Expression


Co-expression Network