CI01000054_04210959_04214380 (NXPH1, NXPH4)


Basic Information

Item Value
gene id CI01000054_04210959_04214380
gene name NXPH1, NXPH4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 4209840 ~ 4214380 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_04210959_04214380.mRNA
TGCAGTGCCTGGGGGAGCCCAGCTGTTTGTGCCTGGCTGGCCGGCTGTCAGTGGGTGAGGTGGGAAGGGCTTGGCCGTGACTCCCCCCCCACCCGAATGTGTTTACCAGATGCACTGTTGCCTCAGGTTTCAAGTGCCCACGGTTCTATCCCGGGGAAGTCGGAGCTGCTCAAATCAGGGAGCCCCAAGTCGACACTAAAGCATATATGGACAGAAAGCAGTAAGGACTTGTCCATCAGTCGACTTCTATCACAGACTCTCCATGGGAAGGAAAACGCAACAGCCCTGGACCTGCACTATGACACTCCGGAGCCTTACTCAGAGCAGGACCTGTGGGATTGGCTGAGGAATACCACGGACCTGCAGGACTCCAGGCCTCGAGCCAAACGGCGGCCGATGGTCAAGACGGGCAAGTTCAAGAAAATGTTCGGCTGGGGAGATTTCCACTCCAACATCAAAACAGTCAAGCTCAACCTCTTGATTACTGGCAAGATCGTCGATCACGGCAATGGCACCTTCAGCGTCTACTTCCGCCATAACTCCACGGGCCAGGGCAATGTGTCCGTCAGCCTGGTCCCCCCCACCAAAATCGTTGAGTTTGACTTGACGGCCCAGCAGTCGGTAATCGACGCCAAGGATTCCAAGTCCTTCAACTGCCGCATCGAGTACGAGAAGGTGGAGAGGGGCTCCAAAAACACACTCTGCAACTTCGACCCATCCAAGACATGTTACCAGGAGCAGACGCAAAGCCACGTGTCCTGGCTCTGCTCGAAGCCCTTCAAAGTCATTTGCATTTACATCTCCTTCTACAGCACCGACTACAAGCTAGTGCAGAAAGTCTGCCCAGATTATAACTACCATAGTGATACTCCTTACTTCCCCTCTGGCTGAAGGTAGCTGCAGACATCACCTACACGGAGGACAACGAGAGGCAAAGGATGGAGCTCTCTCCCCATCCACAACAAATACATGTTCCCCGTACCGTCCATACCATACGTTCATGGCCCGGATCTATTCAAACAACTTGACAAGAGAAGAATTTGGCTGTTTGCACTTTCATTTGAGTGCTTTTGTTTGATCACTTGGTATCTTTAAGTTTCTGCACTTATTAATTTATTGTTTATATCTTTTAATGTTATTTTACCACTGGGGTGTTGCTTGTATGACCATGTAAACTCACGATTTTGTCCTGTAATGTTCCATTTTAATTTAGAAATGTGCAAGTGTTTGGTTTCTCAGAATATTTGTTTAATTAGTTTATTTGTACAAGTACATACATGTTTCTTAGAACTGCCAAGAGGCCACGAGGGTGTAGATACAGTAGGACTTTTACGTTTAGATGGTAGTTCGCCTCAGAAGCGATGTCGCTGGAGAATTATTTGCGATCAGAATCTCAATGTTCCGTCCACCTACAAACTTTTGAACAGCCCTGGAGTCCCCACACGTTCTTGAGTTATTCCTCCCAGCCCAAAGGCCCAAAGATGAGGAGAATGGCTTTGTTCTGCTGGTTATGAACAGGCCTTAACTACAGGCATGTTTTCTACCTATTACAAAGAAGCTGTATTGTAATAATTGCGGATTGTTCGGCCCAAGCTGTCTCCTGTAGTTTAATAAGATCCAGGAATGGTTGGAGGGCTTGCTCATTGTCACTTATAATACACTGTAATGTAATGAATTCTATATCCTAGAGCCTAATTTGTATGAATGGTTTGTATTGTACATAGTTGATCCTGATGGAGCTGCTTCTGTATATGCCTTCATTCATTGTCTGTTAACCCAAAGCCCTACACTCTCTCTCTCTCTCTCAGCACCCCATTCCATATATGCTTGTTCTCGGTTCCTCGGACAAAGAAACTGATGTTGCTGATGTAGATGTGAACTCCATGAAACCCATGCTCTTGTACAGGGGCTGTTAAACTGTCAAAAATATATATTAGAAGTACTTATCATCTGTATGATCATGTTTACTTTCAGGGGGAACCAGGGGATGGAGATGTACAAATGAATAAA

Function

symbol description
nxph1 Predicted to enable signaling receptor binding activity. Predicted to be located in extracellular region. Is expressed in brain and spinal cord. Orthologous to human NXPH1 (neurexophilin 1).
nxph4 Predicted to enable signaling receptor binding activity. Predicted to be located in extracellular region.

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K16656 NXPH1; neurexophilin-1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_04210959_04214380.mRNA True 2010 mRNA 0.47 2 4209840 4214380

Neighbor

gene id symbol gene type direction distance location
CI01000054_04067809_04076131 NA coding downstream 133078 4067799 ~ 4076762 (-)
CI01000054_03998494_04025965 NA coding downstream 183758 3998418 ~ 4026082 (-)
CI01000054_03964701_03964965 NA coding downstream 244875 3964690 ~ 3964965 (-)
CI01000054_03918853_03925416 NA coding downstream 284424 3918398 ~ 3925416 (-)
CI01000054_03485424_03500327 NA coding downstream 709351 3484828 ~ 3500489 (-)
CI01000054_04264074_04331270 THSD7AA, THSD7A coding upstream 49482 4263862 ~ 4331270 (-)
CI01000054_04411682_04448848 NA coding upstream 197049 4411429 ~ 4448848 (-)
CI01000054_04463229_04486856 DLGAP3 coding upstream 248508 4462888 ~ 4486856 (-)
CI01000054_04671351_04681181 PEF1 coding upstream 456594 4670151 ~ 4681361 (-)
CI01000054_05292456_05317677 NA coding upstream 1077919 5292299 ~ 5318991 (-)
G231747 NA non-coding downstream 61276 4148360 ~ 4148564 (-)
G231699 NA non-coding downstream 112855 4096266 ~ 4096985 (-)
G231694 NA non-coding downstream 116712 4092927 ~ 4093128 (-)
G231684 NA non-coding downstream 120375 4024491 ~ 4089465 (-)
G231658 NA non-coding downstream 241820 3967727 ~ 3968020 (-)
G231940 NA non-coding upstream 2 4214382 ~ 4215336 (-)
G231991 NA non-coding upstream 181597 4395977 ~ 4396286 (-)
G231993 NA non-coding upstream 184047 4398427 ~ 4399341 (-)
G231994 NA non-coding upstream 185256 4399636 ~ 4399997 (-)
G231961 NA non-coding upstream 376316 4590696 ~ 4602299 (-)
G231645 NA other downstream 227017 3981847 ~ 3982823 (-)
G230908 NA other downstream 1146497 3057648 ~ 3063343 (-)
CI01000054_02857402_02860451 NA other downstream 1349267 2857402 ~ 2860573 (-)
G230923 NA other downstream 1372158 2837237 ~ 2837682 (-)
G230178 NA other downstream 2979705 1185533 ~ 1230135 (-)
G232274 NA other upstream 991819 5206199 ~ 5209240 (-)
CI01000054_06629482_06641861 TRIQK other upstream 2413702 6628082 ~ 6642160 (-)
CI01000054_07165957_07169539 HEYL other upstream 2951055 7165435 ~ 7169539 (-)
G235216 NA other upstream 5033659 9248039 ~ 9248538 (-)

Expression


Co-expression Network