CI01000054_04264074_04331270 (THSD7AA, THSD7A)


Basic Information

Item Value
gene id CI01000054_04264074_04331270
gene name THSD7AA, THSD7A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 4263862 ~ 4331270 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_04264074_04331270.mRNA
GGCCGTGGGGTAGGTGCATGGGCAGCGAGTGTGGTCCGGGAGGAAGTCAAAGCAGAGCAGTATGGTGTGCCCACTCCGAGGGCTGGACCACGTTACAGACCAACTGCCAGCAGTCAGAGCGACCCAGCAACCAACAGAGCTGCTTCCGGGTGTGCGATTGGCACAAAGAGCTGTACGACTGGCAGCTAGGGGCCTGGAACCAATGTGTGCCGGTGTCTATGCGCAGTGCAGGCGTGCCAAGGCCAGCGGTATGCACTCGGGGCGAAGAGGGCATCCAGACGCGGGAAGTGGGCTGCGTGCACAAATCGGATGGCGTGCCTGCGGAAGATGCCATCTGCGAGTACTTTGAGCCCAAGCCACGGTTAGAGCAGGCCTGCCTTATCCCGTGCCCACGCGACTGTGTGGTATCCGAGTTCTCCCCATGGACGTCCTGCTCCAAGAGTTGTGGGATGGGCTTGCAGAACCGCTTGCGTTTGGTTCTTGCCCCGCCGCTTTTTGGCGGTTCGGCTTGCCCCAACCTCACAGAGTTCCGCACCTGCCAGCCAGGCCAATGTGAAGGCGAGGAAAGCCTGCACAGCCTGAGGTGTTTCTCTCCTCATTGTGTGAAAGCTGGTCAGTCTTCTGTTCCTGTGCATGTGAGAAACCAGTGTATCCAGCAGACTCTTCCTGTGACATATCAAGCCTGTGTCATCCCTAAGGACTGTGAAGTGACTGAGTGGTCGGACTGGTCTGCCTGTTCAAAGGAGTGCTATGATCTGAATGGGCGTAAGGGACAGCGGACACGTACGCGTCAGGTGCAGCAGTTCCCGGTGGGCGGAGGGGCCGAGTGCACTGAGCTGGAGGAGAGTGAGCCGTGTTCACCTCAAGGAGAAGGAATCCCGCCATGTGTAGTATGGAGTGAAGAGGGAAGTGAGAGTGGGGGTGAGGGTCCTGCTGGGGAAGATGGAGAGATGGTAGCAGGTTGGTGGTTTGGCACAGCGCCACCCTGGAGGAGATGGGCCGGTCCATTTCCCATCACTCATCACCTCACTGCACTGGATCTCACCAGAGCGGAGCTGTATTTGATGGAGGTGAATGGTGCTCCTGTAGCTCTGACCCAGGGTATAATTGGAGAACCACTGAGTGGAGCGACTGCAGGGTGGACGTGCTCCTCAGCCAACAGGACCGTCGCCGGAGCAACCAGACAGGGCTCTGTGGAGGCGGGGTTCAAACCAGAGAGGTCTACTGCGTTCAAGCCCCCACCGAAACCTCATCTAACCTCAGCTCCCTCAAGAACAAAGACGGTCACCACAGCCCATGTAAAGACTTGCGCCTCCTCGCGGCCAGTGAACAATGACCTGTGTTTAGGTGTTTCTCCTAACACCACCCAGCTCTGCCATATTCCCTGCCCTGTAGAGTGTGAGGTGTCCTCCTGGAGCGCATGGGGACCCTGCACCTTTGAAAACTGCCAGGATCAGTCCACAAAGAAAGGTTTCAAACTGAGGAAAAGGAAAATCATAAATGAGCCCACGGGTGGCACAGGAAATTGCCCCCACCTGACTGAGGCAATTCCCTGTGAAGAGCCCAGTTGCTATGATTGGCTTCTGGTGAAGCTGGAGGAGTGTGTGCCTGACAATGACAAAGTATGCGGACCGGGAACCCAGAACCCACAAGTACAGTGTATCAATAGTGACGGTGAATACGTGGACCGACAGCTGTGCCGGGATGCCATCCTTCCCATGCCTGTGCTGTGTGAGGTGCCCTGCCCCAAAGACTGTGTGCTCAGTCCCTGGACATCCTGGTCTTTGTGTTCCAACACCTGCTCAGGGAAGAACACAGAGGGCAAGCAGACCAGAGCACGCTCCATTTTGGCCTACAATGCAGGGGACGGTGGGAGTCAGTGCCCCAACAGCAGCGCCTTGCAGGAGGTGCGCAACTGCAATGATCATCCTTGCACTGTGTACCACTGGCAGACGGGGCCCTGGGGTCAGTGCATAGAGGACACCTCCGTTCCGTCTGCCAACAGCTCGCTCAGCCGCGCCGGAGCAGGGGTCGGCACTAATGAGGCGTTCTGCTCAGTCGGAATGCAGACGCGCAAAGTCATTTGTGTCCGGGTCAATGTGGGCCAGGTGCCTCCTAAAAAGTGTCCAGAGAGTCTGCGTCCCGAGACTGTAAGACCGTGTCTTCTGCCCTGCAAGAGAGACTGTATGGTCACTCCGTACAGTGATTGGACACCCTGCCCTTCCACCTGCCAGACAGGTGGTACTGTCAAAAAGAAGCAATCAAGGAAACGCATTATCATTCAGCTTCCGGCTAACGGGGGCCAAGACTGTCCAGAGGTGCTCTTCCAGGAGAAGGAATGCGATGCCTCGTCTGTTTGTCCAGGCTACAGGTGGAAAACCCACAAGTGGCGCAGGTGTCAGTTGGTACCCTGGACTATTCGACAGGACAGTCCTGGAGCACAGGAGACATGTGGACCAGGACTACAGGCTAGAGCCGTCTCATGTAAGAAGTTGGATGGTGGTCCTGCAGACGTTGCAGCCTGTCTCAAGTTTGCAGGTCCTATGCCTCAACTCACTCAATCCTGCCAACTTCCATGCCAGGATGACTGCCAGCTGACCACCTGGTCCAAATTCTCATCCTGTGCCGCTGATTGTGTGGGTGTAAGAACCAGGAAAAGGACCCTTGTTGGTAAAAGCAAAAAGAGAGAACAATGTAAAAACACACAAATGTATCCTCTGAGCGAAACCCAGTACTGCCCCTGCAACAAGTACAACGCCCAGCCTGTGGGTAACTGGTCCGACTGCATCCTTCCCGAGGGTGGACGTGTAGAGGGCCTGTTGGGTATGAAAGTGCAAGGTGATATCAAGGAGTGTGGCCAGGGTTACCGCTTTCAAGCTATGGTGTGCTATGACCAGGATAACCGCCTCGTGGAGACGTCACGCTGCAACAGTCACGGTTACATAGAGGAAGCGTGTATCATCCCCTGTCCATCTGACTGTAAGCTCAGCGAGTGGTCAAACTGGTCCCGTTGCAGCAAGTCCTGCGGCAGTGGAGTCAAAGTACGGTCCAAGTGGCTTCGGGAGAAACCTTATAATGGTGGAAGGCCCTGCCCCAAACTGGACCATGTTAATCAGGTGTATGAAGTGGTACCATGTCTGAGCGACTGCAGTCAGTATGTCTGGGTGGCTGAGCCATGGAGTGTCTGGAAGGTCAGCAATGTTGATCTGAAAGAGAATTGTGGGGAAGGTGTACAGACGAGGAAAGTTAGGTGCATGCAAAATACTGTTGATGGACCTTCAGACCCTGTAGAAGACTATCTCTGTGATCCAGAAGAGATGCCTCTTGGAGCCAGAGAGAGCAAGCTGCCCTGTCCTGACGATTGCGTTCTGACTAACTGGGGCTCTTGGAGTCGATGCCCACTGCCATGCAATGTGAACAGTACAAGGCAGAGGACCGCCAGCCCTATACGTCAGCCTGGTGAAGGGAAACTGTGTCCTTCGACTACAGAGAAAGAAACATGCACTCTGAACACCAACTGCTTCCATTACTCCTATAATATCACAGACTGGAGCACATGTCAGCTGAGTGAGCGAGCTGTGTGCGGGGTTGGATTCAAGACACGCATGCTGGACTGTGTTCGCAGTGATGGCAAGTCTGTGGACCTGAAGTTTTGCATGGAGCTTGGTCTCGAAAAAAAATGGCAGATGAACGCTTCCTGTGTGGTCGAGTGCCCTGTCAACTGCCAGCTGTCTGATTGGTCGTCTTGGTCTGAATGCTCTCACACCTGTGGTCTTGCAGCCCTCTGGAATCGATTAAAGAAAATCAAGAAGGGGAAAGATGAATATTCAGAGTGGTTTCAGGGCCTGGAATTAGGCTTGAAAAATGCCTGGCAGATTAAGTTATTCACAGAAGGGAAGGAACATTACTACACAGAAAAAAGTCTTTCAGGAAAGCTCTGGAGGAGTAGAACTGTGATTCAGGCCTCTCAGGGAGATGGACGGCCATGTTCCTCACAGCTGGAACAGTGGAAGCCCTGTCCTGTTAAACCCTGCTACAGCTGGAGGTACAGCGCCTGGTCTCCATGCAAATCCGAGGGTGCACGTTGTGGAGAGGGCCTGCGCTTTAGGAACGTGTCCTGCTTTGTGTCTGATGGCTCGGGGAAGGATCCGGGCAGTATGGTGGATGAGGAAATGTGTGGAGACCTGGAGCAGACAGTGGATGGAGACAAACAGATCATCCTGCAGGAGTCCTGCACAGTGCCTTGTCCAGGTGAGTGTTACCTGACAGACTGGACTCGGTGGAGCCCGTGTCAGCTGAGCTGTATCAGCGGGGATGATCTAGGGTTCGGGTCGGTGCAGGTGCGTTCTCGTGCCGTTCTAGCTCAGGAACCCGAGAACCTTCTTCAGTGCCCAGAACAGGAATGGGAAGCCAGACCATGTACAGATGGCCGATGTTATGAGTACAAGTGGATGACCGGTGCATGGAAAGGCTCATCTCGTCAAGTCTGGTGCCAGCGCTCTGATGGATTAAACGTCACAGGCGTGGAAATACATGAGAACAGAAGTGGATGCCCATTGACAAGCGAGCCGGTGTCAGACAGGTCATGTGATCCAGCCTGCGACAAACCTCGCTCATACTGCACTGAGAGATGCAAATGCCCTGGTGCATTCCGTGATCGCGCCGATCTGAAGGGTTGTGTTTGCGTGTGGGGCATTTATCCTCCTAAGATTGCAGTGGGAATAAGAGACCCCCTGCAGACCACAGGAACCTGGGGGTTTCTCCACATATATTTGTACACAAGCACTCAGGCCTGCAGAACAATGATGCTCGTGGAGACCCAAAAGTCTTGTCAGTGGAAGAACACGTGCTGGGATGCTGGTATCTGCGGCTGTGAGGAGGGTTACACTGAGGTGATGACGTCTGATGGAGTGTTGGACCAGTGCACGGTCATACCAGTGCTTGAGATCCCCACTGCAGGAGACAGTAAGGCTGACGTGAAGACGATCAGAGCACTCAACCCCACTCTGCCCACCTCCAACCTGCCAGGTCGCTCCGGACGCACCTGGTTCTTGCAGCCCTTCGGTCCTGATGGCAAACTGAAGACCTGGGTGTATGGTGTGGCAGCTGGAGCTTTTGTACTGCTAGTGTTCATTGTCTCCATGACTTATTTAGCCTGTTTTTGTATTCTGGCCCGGCGCTCTCCTTCGAGCCTGGACCCTTCTGTTGCCTCTGTGGTTTGGGTCGGACCCAACGACCAAGAGCTGATATATACCTGCCCTGCCTGTCAGCACATTGAGACTCAGTTCAACTAGAGCTCTCAGCTCAGGCCCATCCCTCATGGCCTTGCCCTGTTGCCAATCATATCCATCACCTATGCCTTCTCACTGTCACATGTGCCTTTCTGACCAATCACATGGAGCTGTTTGGAGGAGGTGAGCTGGTAGATCAACCGTTAGAAACAGAATGTAGATCAGTAGTGTAGCTTTATATATAGTACACTACTTTATGATGCAGACAATATAAA

Function

symbol description
thsd7aa Acts upstream of or within several processes, including axon extension; glomerular filtration; and glomerular visceral epithelial cell development. Predicted to be located in cell projection and membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in nervous system; neural tube; and pectoral fin. Orthologous to human THSD7A (thrombospondin type 1 domain containing 7A).
thsd7a Predicted to be involved in actin cytoskeleton reorganization. Located in plasma membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_04264074_04331270.mRNA True 5506 mRNA 0.54 33 4263862 4331270

Neighbor

gene id symbol gene type direction distance location
CI01000054_04210959_04214380 NXPH1, NXPH4 coding downstream 49482 4209840 ~ 4214380 (-)
CI01000054_04067809_04076131 NA coding downstream 187100 4067799 ~ 4076762 (-)
CI01000054_03998494_04025965 NA coding downstream 237780 3998418 ~ 4026082 (-)
CI01000054_03964701_03964965 NA coding downstream 298897 3964690 ~ 3964965 (-)
CI01000054_03918853_03925416 NA coding downstream 338446 3918398 ~ 3925416 (-)
CI01000054_04411682_04448848 NA coding upstream 80159 4411429 ~ 4448848 (-)
CI01000054_04463229_04486856 DLGAP3 coding upstream 131618 4462888 ~ 4486856 (-)
CI01000054_04671351_04681181 PEF1 coding upstream 339704 4670151 ~ 4681361 (-)
CI01000054_05292456_05317677 NA coding upstream 961029 5292299 ~ 5318991 (-)
CI01000054_05341497_05372926 ANGPT2B coding upstream 1009840 5341110 ~ 5372926 (-)
G231940 NA non-coding downstream 48526 4214382 ~ 4215336 (-)
G231747 NA non-coding downstream 115298 4148360 ~ 4148564 (-)
G231699 NA non-coding downstream 166877 4096266 ~ 4096985 (-)
G231694 NA non-coding downstream 170734 4092927 ~ 4093128 (-)
G231684 NA non-coding downstream 174397 4024491 ~ 4089465 (-)
G231991 NA non-coding upstream 64707 4395977 ~ 4396286 (-)
G231993 NA non-coding upstream 67157 4398427 ~ 4399341 (-)
G231994 NA non-coding upstream 68366 4399636 ~ 4399997 (-)
G231961 NA non-coding upstream 259426 4590696 ~ 4602299 (-)
G231963 NA non-coding upstream 275992 4607262 ~ 4642130 (-)
G231645 NA other downstream 281039 3981847 ~ 3982823 (-)
G230908 NA other downstream 1200519 3057648 ~ 3063343 (-)
CI01000054_02857402_02860451 NA other downstream 1403289 2857402 ~ 2860573 (-)
G230923 NA other downstream 1426180 2837237 ~ 2837682 (-)
G230178 NA other downstream 3033727 1185533 ~ 1230135 (-)
G232274 NA other upstream 874929 5206199 ~ 5209240 (-)
CI01000054_06629482_06641861 TRIQK other upstream 2296812 6628082 ~ 6642160 (-)
CI01000054_07165957_07169539 HEYL other upstream 2834165 7165435 ~ 7169539 (-)
G235216 NA other upstream 4916769 9248039 ~ 9248538 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014205 thsd7aa coding NC_007130.7 CM002903.2 37620342 ~ 37842003 (+)