CI01000054_04372172_04374454


Basic Information

Item Value
gene id CI01000054_04372172_04374454
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 4371425 ~ 4374901 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_04372172_04374454.mRNA
AAATAAATGGATATTTGACAAGTTGCCATTTCAGTGGAGAGATGCTAACCTTTCCACATCAACATACTTCTACTTCTGCCAATGTGTCTTGCATTTGAGCTACAGTCCAGCTACTGTATCTAGCTAGACACTTATCCTGAACTTCCTTCAACTTGGCATTCGATCTCAATGCTTCTTGGATACAAAAAGGTCAAGTCAGATTACGGTTAGCTGATTAGTCAGATAGGAAATCCCCACTCACGCCCAAACTCACTTATTACACTCAGCTTTCACATCAGACATCAGACTCCCAACGTTGAACCAGGCACAAATCAAAAGTCTACTTAGGCTAATTGCAAATGTGGATGCAAATAACTATAATGCTATTGAGAACATTAGGTGGATGGATGGATGGATGGATGGACTCATCGTAAAAGAGGGTGTGACTATTGTTAATGAAGAAATTCTCATTCATCCATAAGGAATTTCTGTTTTTGCTGCTATAATTAAAATCAGACTAAACCTATCAAAGAGGTATTATTTATCTTATGCTACAGTGCCAAATTGTGCCACCCATGCCAAAAGCTGCAGGTGTTTCATTGTGTGCGAGGCAGCAATCATCTGCGCAAATACGTTTATCCAAGCGCTGTGAAAATTTAGAGAACCACTCAAGAATCAACTAAGATAACAAACAGTATTTTTGTTCTTGTTTATTCTCCATCTTTCACTCCCACCTCATCCAGGTTCTCTCCCATTAGTGTCTATAGCATGGATCTAGAGCCAGAGCTCAGCTGCTGCCTGGCTCAACCTGTCTGCTATTTATATCTCCATCAGAATAGTCGCTATGCAATAAAGTATGGCAGTGCTCAGCTCAGCTCCTCACAGACAAGCTTGTGTCAAGTGTGTGTCTACGACATAACAGACAGACAAAGAGATAAAAGTAAGGGATGGGAAAGCAGGCGGCAATCCATTCTTAGCAAACTAATGAGGTGCACGATGCAAGCGTGCATGTGTGAGCAAAAGAAAAGGAAAAGAGAGAAGGGGGCAAGTGGAACAAATCACGCTGTCAGTCTGTCTTTTGTCATCTTTTGGCGAGCACTCATCAGGATTCTCCCCTCGCTCTTCAGGCCATATCGGAGCACACTGAGAAAGCAGAGATTCACATGGATGCGTTTTCCCTGGGATCCAGAATCTAAAGAGAGTCTTGTTGTGCAGTCCTCAGATCCCCTATGTTCTCCCGCACTGACATGCCCTCCCAAGACCTTTTTAACCACAGGGTCAAAGGCTGACCTAAAGAAAAGGATGCTGAAAGGAAAGGTGGGTGGGGTAAAAGGGGGAAGGGTCCTGTTGGACTCAATGGCTTTCTCCCACATGTACGCCACCACTACGCACAATGCTGACCAGGGAGAGAGTTCAGCCCTGTCGATTAAGATCAGCGTGTATGTGTTATATCAGGCAGCTGTAGGGCAGGGAATGGCCCACATAGAGGCCTTGGAGAGTGACGGTCATGCAGAGTGTAATATTGGAAGATATAAGGCAATAAACTGGGCCAGACACCTCCCTAGAGCCTTCAAATACAGCCTCACAGCCCTGAAAACAGGGACATGTAAAAACAAACTGCACTGTCAAATATTTCAGGGCTGAAATAAATTATAGCTTATTGACAGCCTGCAGGTTTTATTCAACTCTGAGTATAAAATGAGAGAGTTTCTTGCTGCTGTGCCTTTCAGAAATGCCCCATTGCATGTGAAATTATCAGCCCTGCTGGCCACCCAATAGGTTATTGATGTTTATACATGGATGGCCATGTTTGGTGTTTAAGTATTAATTTGGGAAAGTCTGGAACAAGTCACTTTTGCAGCCGAGTTTCAGTAAAACTGGGGAGGAAGTTTTGAAAACTGAAAGTTACCGTGAGTTGTCATGACACTGTATGTTTCAAGGTGTTCTATCTCAAAAGATGAAAAATTGATTACATCTAACTAAATAATGATAAAGGTGTCAAAAGTGCTGCCACAGAACAAATTCAGGTGTCTCCTACTCTTCTTTATCCAGAACCATCCAAGGGGAACTATAGGAAATGTTCTTCCAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_04372172_04374454.mRNA True 2070 mRNA 0.43 6 4371425 4374901

Neighbor

gene id symbol gene type direction distance location
CI01000054_04248925_04249335 NA coding upstream 121838 4248359 ~ 4249587 (+)
CI01000054_03955331_03962388 NA coding upstream 409030 3955331 ~ 3962395 (+)
CI01000054_03848427_03914231 NA coding upstream 457194 3848427 ~ 3914231 (+)
CI01000054_03707961_03761024 ADGRB2 coding upstream 610313 3707835 ~ 3761112 (+)
CI01000054_03670684_03671857 NA coding upstream 699422 3670684 ~ 3672003 (+)
CI01000054_04453321_04456780 ILF2, ILF2.L coding downstream 78420 4453321 ~ 4457108 (+)
CI01000054_04658039_04659082 NA coding downstream 283090 4657991 ~ 4659701 (+)
CI01000054_04924205_04945546 NA coding downstream 549258 4924159 ~ 4945841 (+)
CI01000054_04962081_04977729 NA coding downstream 587029 4961930 ~ 4977937 (+)
CI01000054_05145255_05217807 CSMD2 coding downstream 770210 5145111 ~ 5217811 (+)
G231832 NA non-coding upstream 88278 4282516 ~ 4283147 (+)
G231813 NA non-coding upstream 139832 4224024 ~ 4231593 (+)
G231811 NA non-coding upstream 154273 4216880 ~ 4217152 (+)
G231691 NA non-coding upstream 279398 4091604 ~ 4092027 (+)
G231883 NA non-coding downstream 18393 4393294 ~ 4393526 (+)
G231884 NA non-coding downstream 21120 4396021 ~ 4396286 (+)
G231895 NA non-coding downstream 100219 4475120 ~ 4475704 (+)
G232014 NA non-coding downstream 307531 4682432 ~ 4685153 (+)
G232042 NA non-coding downstream 360496 4735397 ~ 4735780 (+)
G230689 NA other upstream 1284033 3078502 ~ 3087392 (+)
CI01000054_02289802_02330591 SLC25A13 other upstream 2067043 2289802 ~ 2330981 (+)
CI01000054_01725792_01726688 NA other upstream 2644632 1725627 ~ 1726793 (+)
CI01000054_01650242_01665628 PLEKHO1A other upstream 2709860 1650242 ~ 1666115 (+)
G231863 NA other downstream 32251 4407152 ~ 4450730 (+)
CI01000054_05608892_05634793 RNF19B other downstream 1248114 5608457 ~ 5634804 (+)
G232558 NA other downstream 1618759 5993660 ~ 6041863 (+)
CI01000054_06305908_06312122 NA other downstream 1929406 6305908 ~ 6312163 (+)
G232659 NA other downstream 1999949 6374850 ~ 6375894 (+)

Expression


Co-expression Network