CI01000054_04463229_04486856 (DLGAP3)


Basic Information

Item Value
gene id CI01000054_04463229_04486856
gene name DLGAP3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 4462888 ~ 4486856 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_04463229_04486856.mRNA
ATGACCTCTCACGCCAGTGTACAGCATTCGATATTTAACAAGAAGAGGTCAATGGCAGCGCTGCTACGCCAGAAGGATCAGAGTGTGCTTGTTCTGCATTGTCAGCTGCCTGGTTGTAGTTGTTATTGGAATACAAAACAGCACATCCCTGAAAAGGAAAATGATATCATTTGTTACAACATTAACCATTTTTTGATAAAGGGGACAAGGGCTTTTTCAGTTGACTCCGGCGCAGCCCTGTCGCGCCCACAGCGGCCCCTCTCGGCCCGGGCGGCCCACCATGCCCCGGCCATGAAGGGTTATCAGGTGAGTCGCAGTCTATCGCAACACTCCTCCGGGCCTTGCTACTGCATGCCTGAGGACTGCGACACTGCGCGGGACTACATGCACCACCCCGACCACTACCAGGGGCACAATGACCACCCCTACTACCCGCCTGGTGGGCCCCCTGAACACCTGGCCATGGTCCCATCTGGTGGAGGCACCTTCCCTCGCTCACACCCCAGTCAGCCGCAGCCCTACGACTCCTCGTGTGAAGAGTGTTTATCCTCGGCAGGGCATGGCCACGGGGGAAAGATGCACCGTATCCCGCCCAACCTTCTGGATCAGTTCGAGAAACAGGTGCCCTTCCACCCCGATGGCTTCCATACCCTGCAGTACCAACGTACAGCCAGTGGGGAGCAACGCAGCGAGAGTCCGAGTCGCATACGGCATCTGGTGAACTCAGTTCAGCGTCTTTTCGCCAAGTCTCATTCTCTGGAGACGCCCTCTAAACGGGAGTTTAACGGCACCCGTGGGGGAGAGTATCGGGACAGGGATAGGGGGCACCGCAGCGGTGGCGAGGAGAGTGGCGGACATCATTATTCGGGAACACACCAGTCTCGCTCTGCCCGCCGCAACAAGAGCCGAGAACGAAGCAAGAGCGGAGACTCCCGCCACGAGTCTCGAAGCTCCCGCCACCGCAGCAAAACGGCTGGCTGGTGGAGCTCCGATGACAACCTGGACAGCGACAGCAGCTTTCTGGTGGGTGCGGGCAGGGGTGGCCGGGGGTATCCCACTGGACACGAGACTCTGGATGCTGCCATCCAGGAGCTTACCTTGAGGAAAGCTAAGGGTCCACCTCCAGGAGAGTGCCTGGCTTGCACCAACATAGCCATGGCAGGGGACAGCGGACACTCTCTGAAGAGGAGCACATGGTCAGCCATGACGGTGCCCTCAGATGACTGGTGTGGTGGCGGTCCATCCGACAGTGGTGGGGAGATCCCCTGCAGACGTATGCGCAGTGGCAGCTACATCAAGGCCATGGGGGACGACGACAGCGCTGACTCAGACACCAGCCCCAAAGCCTCACCCAAATCAGCCCTCATCGCCCAGAGAGAAGCCTTCCGCCGGTCTGTCAGCATGGACCAGCGCTCCTCCACCACATCCAAGTACTCGTGTAAACAATGTACAGACGTCTACCCGAACAGCCGCACCACGCCTAAGGGCCACGCTCGCTCCCGCAGCTACACACGCTCTCTGACCAGCGCTCAGCTGAGCGACTCTCTGAACCTGTTTGGAGAGATGGAATCACAGGCCGTTGAGGCACTGGATCTACCCGGATGCTTCCGCACCCGCAGTCACAGCTACGTACGGGCCATCCAAGCCGGCTGCTCCCAGGACGATGACTGCCTGTCTGTCTTCTCCATGTCGGGCCCACAGGGGAGCGTGAAGGGCGAAGCAGTGTTCCCATACAGGAAAGGACCCCCTCCTCTTCCCCCTCGCATGTCCAAGCCAATGATCTCTGTGACCGCTCAAAGCAGCACTGAGTCCACTCAGGACGCTTACTTCCAGAGTACAGGACAGCCTGTTCTGGTCCGGCCCAGACAGCACAGCAACTCAGTGGACCTGACAGAAAGCAGCGGGGGCCGTACCTCAAGAGGTGGGCATTACCTTGGCGGGAGTACGACGCGGGTCAGACAGAGCAGCAACTCTGCAGAGAGTCTGAACGGCAGGGCCCTTCAGAGCATCGGCTACCCTGGTGGACCTGGTCCAATGAAACCGAAACACAGCAGCTCGGCCGATAACCTGCTGGAGGGGCCCAGGGGATCCAGGGACCGGGCTGGAGGCAGCCTGGGAAAATCGTCCTCGCTGCCCCAGAACAGTATGTCCCTAGCTAAAGCTCTGACTGGAGGAGAGGAGTTCAAACAGGAAGGACGAGGAAGGAAGTGGAGACCCTCTATCGCAGTGCAGGTGGACAGCTCAGAGACATTGTCTGACTCAGACCCTGAAGGCAAAGCGCTGAGAGAGGTGCACTCCATAGGGGTTCAGGTGGAGGATGACAAGAGACGAGCCCGTTTCAAACGCTCCAATAGTGTGACAGCGAGTGTCCAGGCTGATCTTGAGACAGAGGGTTTTGGTGGGCTGACTGTCCCCACTCAAGACAAGGGCCTGCAGTTTGGCTGCTCATTCCAGCGCCACTCGTCTGAACCGGAATCAGCCGGTCAGTTTGCAGAATACCGCACAGTGCACACACAGGGCCAGTGGGCCTACCGTGAGGATTACCACAGCGGTTACACCACCGAGCCAGGCCCTCCAGAACTGAGGGCCCTGCCCCGCTCTCACTCCCCTCTGCCCCTGGCCCCCGAGCGGGGAGTGGGAGGTTGGAGCGAGGGCCCGCGGAGCCTCCCAGATTCGGGCCGAGCCTCACCCTGCTTACGGGATGGAGAGTTCTTCCTCCGGCTCCTGCAGACAGAGGTAGAGAGGATGGAGGGATGGTGCCAGAACATGGAGAGGGAGGCAGAGACGAATGAACTGCCGGAAGATGTGCTGGAACTCATCAGAGGAGCCGTCGGCAGTGCTCAGATGCTCATGTCACAAAGAGTCCAGCAGTTCTTCAGGATGTGCCAACAGAGTGTGGATCCTTCATCATACCCTCAGCCCACCACTCAGGATCTGGCCAGTTATTGGGACCTCCTCCAGCTAGCCATTGAGGACGTCAGAGTGAAGTTTCAGGACCTCCAGCGGCTGAAAGACTCTGGTTGGCGGTTGCCTCCAGAGAAGAAGGAGGACAAGAAGGTTCCACCTCCATTACCAAAGAAGCCCATCGGTGGCGTAACGGGCAGCCTGAGAGCCGACAGCACAGCCGAGGCCGGAGGCATGCTGGTGGTCTCACGTGGACGTAGTGTCCCCGAACGGGAAAAATCGCTGGACGTGGGTGAACGGCAGAAGCTGGAGACACGGCGCAGGCTGCTCCAGACCAAACGCTCCGCCTCTTTCCGCCAGAATTCTGCCACGGAGAGCGCTGACAGCATCGAGATCTACATCACAGAGGCTCAGACGAGACTCTGAATCAGTCAGACCCCTCCAGACCCCCGGAAACAACCACTACGGCTCTTCTCTGGCCCTCTGCACAGATGTCCAGAGAGCGAGTGCAATCACTCACTTTAGTGTTGATAGAGAACTAGAGATGGCCTACTAGTATGCTGCTGGCATTTGGATGTGAGCTTACACATTTTCTTTTCTTCTTTTTTTTTGTTGAGCAAGTGTTATTATTCTCAGAAAAAGGGCTCAACCAGCACAACCAAGTGTTACAAGATTGAGACTTTTGTAAGTCCACAAAATATATAAAAATCTTAGGACTGTTTTAATGAACCACAGCAACACATACGGGTGCAATATCACATATTAAA

Function

symbol description
dlgap3 Predicted to enable molecular adaptor activity. Predicted to be involved in regulation of postsynaptic neurotransmitter receptor activity. Predicted to act upstream of or within signaling. Predicted to be active in glutamatergic synapse and postsynaptic specialization. Orthologous to human DLGAP3 (DLG associated protein 3).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0023052 signaling biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_04463229_04486856.mRNA True 3671 mRNA 0.58 13 4462888 4486856

Neighbor

gene id symbol gene type direction distance location
CI01000054_04411682_04448848 NA coding downstream 14040 4411429 ~ 4448848 (-)
CI01000054_04264074_04331270 THSD7AA, THSD7A coding downstream 131618 4263862 ~ 4331270 (-)
CI01000054_04210959_04214380 NXPH1, NXPH4 coding downstream 248508 4209840 ~ 4214380 (-)
CI01000054_04067809_04076131 NA coding downstream 386126 4067799 ~ 4076762 (-)
CI01000054_03998494_04025965 NA coding downstream 436806 3998418 ~ 4026082 (-)
CI01000054_04671351_04681181 PEF1 coding upstream 184118 4670151 ~ 4681361 (-)
CI01000054_05292456_05317677 NA coding upstream 805443 5292299 ~ 5318991 (-)
CI01000054_05341497_05372926 ANGPT2B coding upstream 854254 5341110 ~ 5372926 (-)
CI01000054_05685529_05686880 NA coding upstream 1198644 5685500 ~ 5687414 (-)
CI01000054_05711250_05711861 NA coding upstream 1223766 5710622 ~ 5712639 (-)
G231994 NA non-coding downstream 62891 4399636 ~ 4399997 (-)
G231993 NA non-coding downstream 63547 4398427 ~ 4399341 (-)
G231991 NA non-coding downstream 66602 4395977 ~ 4396286 (-)
G231940 NA non-coding downstream 247552 4214382 ~ 4215336 (-)
G231747 NA non-coding downstream 314324 4148360 ~ 4148564 (-)
G231961 NA non-coding upstream 103840 4590696 ~ 4602299 (-)
G231963 NA non-coding upstream 120406 4607262 ~ 4642130 (-)
G232003 NA non-coding upstream 156190 4643046 ~ 4643322 (-)
G232012 NA non-coding upstream 178129 4664985 ~ 4665241 (-)
G232013 NA non-coding upstream 178572 4665428 ~ 4665667 (-)
G231645 NA other downstream 480065 3981847 ~ 3982823 (-)
G230908 NA other downstream 1399545 3057648 ~ 3063343 (-)
CI01000054_02857402_02860451 NA other downstream 1602315 2857402 ~ 2860573 (-)
G230923 NA other downstream 1625206 2837237 ~ 2837682 (-)
G230178 NA other downstream 3232753 1185533 ~ 1230135 (-)
G232274 NA other upstream 719343 5206199 ~ 5209240 (-)
CI01000054_06629482_06641861 TRIQK other upstream 2141226 6628082 ~ 6642160 (-)
CI01000054_07165957_07169539 HEYL other upstream 2678579 7165435 ~ 7169539 (-)
G235216 NA other upstream 4761183 9248039 ~ 9248538 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014201 dlgap3 coding NC_007130.7 CM002903.2 37458610 ~ 37492517 (+)